deepvariant-r1.6.1 / Git / Commit [9b26b7]

Catherine Stones

deepvariant-r1.6.1

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Commit [9b26b7] main

Initial commit

Authored by: cathy-stones 2024-08-08

Browse code at this revision

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added	deeptrio/testdata/input/with_types.test_nist.b37_chr20_4kbp_at_10mb.vcf.gz.tbi
added	deepvariant/BUILD
added	deepvariant/allele_frequency.py
added	deepvariant/allele_frequency_test.py
added	deepvariant/allelecounter.cc
added	deepvariant/allelecounter.h
added	deepvariant/allelecounter_test.cc
added	deepvariant/average_model_checkpoint_patched.py
added	deepvariant/call_variants.py
added	deepvariant/call_variants_accelerator_test.py
added	deepvariant/call_variants_slim.py
added	deepvariant/call_variants_slim_test.py
added	deepvariant/call_variants_test.py
added	deepvariant/cohort_best_practice/DeepVariantWES_v1.yml
added	deepvariant/cohort_best_practice/DeepVariantWGS_v1.yml
added	deepvariant/cohort_best_practice/DeepVariant_unfiltered_v1.yml
added	deepvariant/convert_to_saved_model.py
added	deepvariant/dashboard_utils.py
added	deepvariant/dashboard_utils_test.py
added	deepvariant/data_providers.py
added	deepvariant/data_providers_test.py
added	deepvariant/direct_phasing.cc
added	deepvariant/direct_phasing.h
added	deepvariant/direct_phasing_test.cc
added	deepvariant/dv_config.py

deeptrio/testdata/input/with_types.test_nist.b37_chr20_4kbp_at_10mb.vcf.gz.tbi

Binary file was added.

deepvariant/BUILD Diff Switch to side-by-side view

deepvariant/allele_frequency.py Diff Switch to side-by-side view

deepvariant/allele_frequency_test.py Diff Switch to side-by-side view

deepvariant/allelecounter.cc Diff Switch to side-by-side view

deepvariant/allelecounter.h Diff Switch to side-by-side view

deepvariant/allelecounter_test.cc Diff Switch to side-by-side view

deepvariant/average_model_checkpoint_patched.py Diff Switch to side-by-side view

deepvariant/call_variants.py Diff Switch to side-by-side view

deepvariant/call_variants_accelerator_test.py Diff Switch to side-by-side view

deepvariant/call_variants_slim.py Diff Switch to side-by-side view

deepvariant/call_variants_slim_test.py Diff Switch to side-by-side view

deepvariant/call_variants_test.py Diff Switch to side-by-side view

deepvariant/cohort_best_practice/DeepVariantWES_v1.yml Diff Switch to side-by-side view

deepvariant/cohort_best_practice/DeepVariantWGS_v1.yml Diff Switch to side-by-side view

deepvariant/cohort_best_practice/DeepVariant_unfiltered_v1.yml Diff Switch to side-by-side view

deepvariant/convert_to_saved_model.py Diff Switch to side-by-side view

deepvariant/dashboard_utils.py Diff Switch to side-by-side view

deepvariant/dashboard_utils_test.py Diff Switch to side-by-side view

deepvariant/data_providers.py Diff Switch to side-by-side view

deepvariant/data_providers_test.py Diff Switch to side-by-side view

deepvariant/direct_phasing.cc Diff Switch to side-by-side view

deepvariant/direct_phasing.h Diff Switch to side-by-side view

deepvariant/direct_phasing_test.cc Diff Switch to side-by-side view

deepvariant/dv_config.py Diff Switch to side-by-side view

<< < 1 .. 3 4 5 6 7 .. 31 > >> (Page 5 of 31)