--- a +++ b/processing/MACCROBAT/28321070.ann @@ -0,0 +1,283 @@ +T1 Age 3 14 84-year-old +T2 Sex 15 20 woman +T3 Sign_symptom 54 61 dyspnea +E1 Sign_symptom:T3 +T4 Nonbiological_location 36 48 local clinic +T5 Clinical_event 21 30 presented +E2 Clinical_event:T5 +R1 MODIFY Arg1:T4 Arg2:E2 +T6 Sign_symptom 88 92 pain +E3 Sign_symptom:T6 +T7 Biological_structure 78 87 left back +R2 MODIFY Arg1:T7 Arg2:E3 +T8 Detailed_description 62 73 on exertion +R3 MODIFY Arg1:T8 Arg2:E1 +T9 Duration 93 114 persisting for a mont +E4 Duration:T9 +T10 Clinical_event 125 133 admitted +E5 Clinical_event:T10 +T11 Nonbiological_location 141 149 hospital +R4 MODIFY Arg1:T11 Arg2:E5 +T12 Sign_symptom 166 182 pleural effusion +E6 Sign_symptom:T12 +T13 Detailed_description 161 165 left +R5 MODIFY Arg1:T13 Arg2:E6 +T14 Diagnostic_procedure 194 199 X-ray +E7 Diagnostic_procedure:T14 +T15 Biological_structure 188 193 chest +R6 MODIFY Arg1:T15 Arg2:E7 +T16 History 214 226 hypertension +T17 History 252 307 no history of pleural tuberculosis or chronic pyothorax +T18 Diagnostic_procedure 352 363 examination +E8 Diagnostic_procedure:T18 +T19 Diagnostic_procedure 369 380 vital signs +E9 Diagnostic_procedure:T19 +T20 Diagnostic_procedure 385 402 oxygen saturation +E10 Diagnostic_procedure:T20 +T21 Lab_value 408 414 normal +R7 MODIFY Arg1:T21 Arg2:E10 +R8 MODIFY Arg1:T21 Arg2:E9 +T22 Diagnostic_procedure 416 420 SpO2 +E11 Diagnostic_procedure:T22 +T23 Lab_value 422 425 96% +R9 MODIFY Arg1:T23 Arg2:E11 +T24 Detailed_description 426 437 ambient air +R10 MODIFY Arg1:T24 Arg2:E11 +T25 Diagnostic_procedure 442 459 chest examination +E12 Diagnostic_procedure:T25 +T26 Sign_symptom 471 475 mass +E13 Sign_symptom:T26 +T27 Sign_symptom 510 514 pain +E14 Sign_symptom:T27 +T28 Biological_structure 483 504 left side of her back +R11 MODIFY Arg1:T28 Arg2:E14 +T29 Sign_symptom 519 545 decreased breathing sounds +E15 Sign_symptom:T29 +T30 Biological_structure 553 574 left lower-lung field +R12 MODIFY Arg1:T30 Arg2:E15 +T31 Diagnostic_procedure 592 612 examination findings +E16 Diagnostic_procedure:T31 +T32 Detailed_description 576 584 The rest +R13 MODIFY Arg1:T32 Arg2:E16 +T33 Lab_value 618 624 normal +R14 MODIFY Arg1:T33 Arg2:E16 +T34 Diagnostic_procedure 626 642 Laboratory tests +E17 Diagnostic_procedure:T34 +T35 Diagnostic_procedure 671 689 C reactive protein +E18 Diagnostic_procedure:T35 +T36 Lab_value 652 667 elevated levels +R15 MODIFY Arg1:T36 Arg2:E18 +T37 Diagnostic_procedure 691 712 lactate dehydrogenase +E19 Diagnostic_procedure:T37 +T38 Diagnostic_procedure 714 717 LDH +E20 Diagnostic_procedure:T38 +R16 IDENTICAL Arg1:E20 Arg2:E19 +R17 MODIFY Arg1:T36 Arg2:E19 +T39 Diagnostic_procedure 724 754 soluble interleukin-2 receptor +E21 Diagnostic_procedure:T39 +T40 Diagnostic_procedure 756 762 sIL-2R +E22 Diagnostic_procedure:T40 +R18 IDENTICAL Arg1:E22 Arg2:E21 +R19 MODIFY Arg1:T36 Arg2:E21 +T41 Diagnostic_procedure 783 788 X-ray +E23 Diagnostic_procedure:T41 +T42 Biological_structure 777 782 chest +R20 MODIFY Arg1:T42 Arg2:E23 +T43 Sign_symptom 809 825 pleural effusion +E24 Sign_symptom:T43 +T44 Detailed_description 804 808 left +R21 MODIFY Arg1:T44 Arg2:E24 +T45 Detailed_description 831 848 mediastinal shift +R22 MODIFY Arg1:T45 Arg2:E24 +T46 Date 850 875 On the first hospital day +E25 Date:T46 +T47 Biological_structure 880 891 intercostal +T48 Therapeutic_procedure 892 905 drainage tube +E26 Therapeutic_procedure:T48 +R23 MODIFY Arg1:T47 Arg2:E26 +T49 Diagnostic_procedure 946 965 computed tomography +E27 Diagnostic_procedure:T49 +T50 Diagnostic_procedure 967 969 CT +E28 Diagnostic_procedure:T50 +R24 IDENTICAL Arg1:E28 Arg2:E27 +T51 Biological_structure 940 945 chest +R25 MODIFY Arg1:T51 Arg2:E27 +T52 Sign_symptom 1009 1013 mass +E29 Sign_symptom:T52 +T53 Biological_structure 1001 1008 pleural +T54 Detailed_description 991 1000 irregular +R26 MODIFY Arg1:T53 Arg2:E29 +R27 MODIFY Arg1:T54 Arg2:E29 +T55 Biological_structure 1027 1042 left chest wall +R28 MODIFY Arg1:T55 Arg2:E29 +T56 Sign_symptom 1052 1063 destruction +E30 Sign_symptom:T56 +T57 Biological_structure 1048 1051 rib +R29 MODIFY Arg1:T57 Arg2:E30 +T58 Sign_symptom 1068 1084 pleural effusion +E31 Sign_symptom:T58 +T59 Sign_symptom 1090 1094 mass +E32 Sign_symptom:T59 +T60 Biological_structure 1099 1136 adjacent to the posterior mediastinum +R30 MODIFY Arg1:T60 Arg2:E32 +T61 Sign_symptom 1296 1304 purulent +E33 Sign_symptom:T61 +A1 POLARITY E33 NEG +T63 Biological_structure 1263 1276 pleural fluid +R31 MODIFY Arg1:T63 Arg2:E33 +T62 Sign_symptom 1281 1287 serous +E34 Sign_symptom:T62 +R32 MODIFY Arg1:T63 Arg2:E34 +T64 Sign_symptom 1166 1170 mass +E35 Sign_symptom:T64 +R33 IDENTICAL Arg1:E35 Arg2:E32 +T65 Detailed_description 1146 1158 lateral side +T66 Detailed_description 1175 1180 thick +T67 Biological_structure 1198 1208 chest wall +R34 MODIFY Arg1:T65 Arg2:E35 +R35 MODIFY Arg1:T66 Arg2:E35 +R36 MODIFY Arg1:T67 Arg2:E35 +T68 Disease_disorder 1241 1257 chest wall tumor +E36 Disease_disorder:T68 +T69 Sign_symptom 1231 1235 mass +E37 Sign_symptom:T69 +R37 IDENTICAL Arg1:E37 Arg2:E35 +T70 Diagnostic_procedure 1308 1322 fluid analysis +E38 Diagnostic_procedure:T70 +T71 Lab_value 1339 1348 exudative +R38 MODIFY Arg1:T71 Arg2:E38 +T72 Lab_value 1354 1399 81% of the white blood cells were lymphocytes +R39 MODIFY Arg1:T72 Arg2:E38 +T73 Diagnostic_procedure 1405 1418 fluid culture +E39 Diagnostic_procedure:T73 +T74 Lab_value 1423 1431 negative +R40 MODIFY Arg1:T74 Arg2:E39 +T75 Diagnostic_procedure 1437 1445 cytology +E40 Diagnostic_procedure:T75 +T76 Sign_symptom 1475 1485 malignancy +E41 Sign_symptom:T76 +A2 POLARITY E41 NEG +R41 MODIFY Arg1:E41 Arg2:E40 +T77 Diagnostic_procedure 1514 1520 biopsy +E42 Diagnostic_procedure:T77 +T78 Detailed_description 1507 1513 needle +R42 MODIFY Arg1:T78 Arg2:E42 +T79 Detailed_description 1497 1506 CT-guided +R43 MODIFY Arg1:T79 Arg2:E42 +T80 Diagnostic_procedure 1540 1554 histopathology +E43 Diagnostic_procedure:T80 +T81 Disease_disorder 1588 1617 diffuse large B-cell lymphoma +E44 Disease_disorder:T81 +T82 Disease_disorder 1619 1624 DLBCL +E45 Disease_disorder:T82 +R44 IDENTICAL Arg1:E45 Arg2:E44 +T83 Diagnostic_procedure 1648 1652 CD10 +E46 Diagnostic_procedure:T83 +T84 Diagnostic_procedure 1657 1661 CD20 +E47 Diagnostic_procedure:T84 +T85 Diagnostic_procedure 1679 1682 CD3 +E48 Diagnostic_procedure:T85 +T86 Diagnostic_procedure 1687 1690 CD5 +E49 Diagnostic_procedure:T86 +T87 Lab_value 1635 1643 positive +R45 MODIFY Arg1:T87 Arg2:E46 +R46 MODIFY Arg1:T87 Arg2:E47 +T88 Lab_value 1666 1674 negative +R47 MODIFY Arg1:T88 Arg2:E48 +R48 MODIFY Arg1:T88 Arg2:E49 +T89 Diagnostic_procedure 1700 1770 18-fluorodeoxyglucose positron emission tomography/computed tomography +E50 Diagnostic_procedure:T89 +T90 Diagnostic_procedure 1772 1782 FDG-PET/CT +E51 Diagnostic_procedure:T90 +R49 IDENTICAL Arg1:E51 Arg2:E50 +T91 Sign_symptom 1793 1808 high FDG uptake +E52 Sign_symptom:T91 +T92 History 2007 2057 never had either tuberculous pleurisy or pyothorax +T93 Diagnostic_procedure 2063 2081 performance status +E53 Diagnostic_procedure:T93 +T94 Diagnostic_procedure 2083 2085 PS +E54 Diagnostic_procedure:T94 +R50 IDENTICAL Arg1:E54 Arg2:E53 +T95 Lab_value 2091 2092 3 +R51 MODIFY Arg1:T95 Arg2:E53 +T96 Sign_symptom 1832 1836 mass +E55 Sign_symptom:T96 +T97 Biological_structure 1816 1831 left chest wall +R52 MODIFY Arg1:T97 Arg2:E55 +T98 Disease_disorder 1903 1929 primary malignant lymphoma +E56 Disease_disorder:T98 +T99 Biological_structure 1930 1961 originating from the chest wall +R53 MODIFY Arg1:T99 Arg2:E56 +T100 Sign_symptom 2122 2129 fatigue +E57 Sign_symptom:T100 +#1 AnnotatorNotes T95 Capable of only limited selfcare; confined to bed or chair more than 50% of waking hours +T101 Sign_symptom 2113 2117 pain +E58 Sign_symptom:T101 +T102 Biological_structure 2108 2112 back +R54 MODIFY Arg1:T102 Arg2:E58 +T103 Medication 2273 2282 etoposide +E59 Medication:T103 +T104 Medication 2245 2254 Rituximab +E60 Medication:T104 +A3 POLARITY E60 NEG +T105 Administration 2268 2272 oral +T106 Detailed_description 2259 2267 low-dose +R55 MODIFY Arg1:T105 Arg2:E59 +R56 MODIFY Arg1:T106 Arg2:E59 +T107 Dosage 2284 2304 50 mg/day d1-14, q28 +R57 MODIFY Arg1:T107 Arg2:E59 +T108 Sign_symptom 2328 2344 pleural effusion +E61 Sign_symptom:T108 +A4 POLARITY E61 NEG +T109 Date 2357 2373 within two weeks +E62 Date:T109 +T110 Sign_symptom 2384 2388 pain +E63 Sign_symptom:T110 +A5 POLARITY E63 NEG +T111 Biological_structure 2379 2383 back +R58 MODIFY Arg1:T111 Arg2:E63 +T112 Diagnostic_procedure 2410 2412 PS +E64 Diagnostic_procedure:T112 +T113 Lab_value 2425 2426 1 +R59 MODIFY Arg1:T113 Arg2:E64 +T114 Date 2427 2441 within a month +E65 Date:T114 +T115 Diagnostic_procedure 2443 2451 Chest CT +E66 Diagnostic_procedure:T115 +T116 Date 2462 2479 four months later +E67 Date:T116 +T117 Lab_value 2487 2504 complete response +R60 MODIFY Arg1:T117 Arg2:E66 +T118 Medication 2540 2552 chemotherapy +E68 Medication:T118 +T119 Administration 2535 2539 oral +R61 MODIFY Arg1:T119 Arg2:E68 +T120 Diagnostic_procedure 2575 2577 PS +E69 Diagnostic_procedure:T120 +T121 Lab_value 2570 2574 good +R62 MODIFY Arg1:T121 Arg2:E69 +T122 Date 2582 2610 one year after the diagnosis +E70 Date:T122 +* OVERLAP E3 E4 E1 +R63 AFTER Arg1:E2 Arg2:E1 +R64 BEFORE Arg1:E4 Arg2:E5 +* OVERLAP E5 E6 E7 E8 E9 E10 E11 E12 E13 E14 E15 E16 E17 E18 E19 E21 E23 E24 +R65 BEFORE Arg1:E24 Arg2:E25 +* OVERLAP E25 E26 +R66 BEFORE Arg1:E26 Arg2:E27 +* OVERLAP E27 E29 E30 E31 E32 E35 E36 E34 E33 E38 E39 E40 E41 +R67 BEFORE Arg1:E41 Arg2:E42 +* OVERLAP E42 E43 E44 E46 E47 E48 E49 E50 E52 E55 E56 +R68 BEFORE Arg1:E56 Arg2:E53 +* OVERLAP E53 E58 E57 E60 +R69 BEFORE Arg1:E60 Arg2:E59 +R70 BEFORE Arg1:E59 Arg2:E61 +* OVERLAP E61 E62 E63 +R71 BEFORE Arg1:E63 Arg2:E64 +* OVERLAP E64 E65 +R72 BEFORE Arg1:E65 Arg2:E66 +* OVERLAP E66 E67 +R73 BEFORE Arg1:E67 Arg2:E68 +* OVERLAP E68 E69 E70 +T123 History 231 243 dyslipidemia +T124 History 309 347 nor a smoking history or dust exposure