--- a +++ b/processing/MACCROBAT/28320420.ann @@ -0,0 +1,360 @@ +T1 Age 3 14 18-year-old +T2 Occupation 15 30 college student +T3 Clinical_event 35 43 referred +E1 Clinical_event:T3 +T4 Diagnostic_procedure 86 96 hemoglobin +E2 Diagnostic_procedure:T4 +T5 Lab_value 101 109 4.7 g/dl +R1 MODIFY Arg1:T5 Arg2:E2 +T6 Lab_value 82 85 low +R2 MODIFY Arg1:T6 Arg2:E2 +T7 Nonbiological_location 44 70 from the University Clinic +R3 MODIFY Arg1:T7 Arg2:E1 +T8 History 112 134 He was completely well +T9 Date 140 154 one month back +E3 Date:T9 +T10 Sign_symptom 183 195 fatigability +E4 Sign_symptom:T10 +T11 Sign_symptom 206 215 dizziness +E5 Sign_symptom:T11 +T12 Sign_symptom 217 228 palpitation +E6 Sign_symptom:T12 +T13 Sign_symptom 233 240 dyspnea +E7 Sign_symptom:T13 +T14 Detailed_description 178 182 easy +T15 Detailed_description 197 205 postural +R4 MODIFY Arg1:T14 Arg2:E4 +R5 MODIFY Arg1:T15 Arg2:E5 +T16 Sign_symptom 267 278 weight loss +E8 Sign_symptom:T16 +T17 Lab_value 261 266 30 kg +R6 MODIFY Arg1:T17 Arg2:E8 +T18 Duration 279 301 over the past 6 months +E9 Duration:T18 +T19 History 261 301 30 kg weight loss over the past 6 months +T20 Diagnostic_procedure 306 326 physical examination +E10 Diagnostic_procedure:T20 +T21 Sign_symptom 338 342 pale +E11 Sign_symptom:T21 +T22 Sign_symptom 348 357 jaundiced +E12 Sign_symptom:T22 +A1 POLARITY E12 NEG +T23 Sign_symptom 361 369 cyanosed +E13 Sign_symptom:T23 +A2 POLARITY E13 NEG +T24 Diagnostic_procedure 375 386 vital signs +E14 Diagnostic_procedure:T24 +T25 Lab_value 396 416 within normal limits +R7 MODIFY Arg1:T25 Arg2:E14 +T26 Diagnostic_procedure 441 451 heart rate +E15 Diagnostic_procedure:T26 +T27 Lab_value 432 440 elevated +T28 Lab_value 453 459 98/min +R8 MODIFY Arg1:T27 Arg2:E15 +R9 MODIFY Arg1:T28 Arg2:E15 +T29 Diagnostic_procedure 504 516 examinations +E16 Diagnostic_procedure:T29 +T30 Biological_structure 494 503 abdominal +T31 Biological_structure 478 489 respiratory +T32 Biological_structure 462 476 Cardiovascular +R10 MODIFY Arg1:T30 Arg2:E16 +R11 MODIFY Arg1:T31 Arg2:E16 +R12 MODIFY Arg1:T32 Arg2:E16 +T33 Lab_value 522 534 unremarkable +R13 MODIFY Arg1:T33 Arg2:E16 +T34 Clinical_event 544 558 investigations +E17 Clinical_event:T34 +T35 Nonbiological_location 566 574 hospital +R14 MODIFY Arg1:T35 Arg2:E17 +T36 Diagnostic_procedure 588 598 hemoglobin +E18 Diagnostic_procedure:T36 +T37 Lab_value 584 587 low +R15 MODIFY Arg1:T37 Arg2:E18 +T38 Lab_value 606 614 5.1 g/dl +R16 MODIFY Arg1:T38 Arg2:E18 +T39 Diagnostic_procedure 621 625 iron +E19 Diagnostic_procedure:T39 +T40 Lab_value 617 620 low +R17 MODIFY Arg1:T40 Arg2:E19 +T41 Lab_value 627 636 <10 ug/dl +R18 MODIFY Arg1:T41 Arg2:E19 +T42 Diagnostic_procedure 654 671 occult blood test +E20 Diagnostic_procedure:T42 +T43 Lab_value 645 653 positive +R19 MODIFY Arg1:T43 Arg2:E20 +T44 Disease_disorder 700 729 microcytic hypochromic anemia +E21 Disease_disorder:T44 +A3 POLARITY E21 UNCERTAIN +T45 Diagnostic_procedure 759 779 Bone marrow aspirate +E22 Diagnostic_procedure:T45 +T46 Diagnostic_procedure 784 799 trephine biopsy +E23 Diagnostic_procedure:T46 +T47 Lab_value 809 829 normocellular marrow +R20 MODIFY Arg1:T47 Arg2:E23 +R21 MODIFY Arg1:T47 Arg2:E22 +T48 Lab_value 841 872 normal trilineage hematopoiesis +R22 MODIFY Arg1:T48 Arg2:E23 +R23 MODIFY Arg1:T48 Arg2:E22 +T49 Diagnostic_procedure 883 892 endoscopy +E24 Diagnostic_procedure:T49 +T50 Biological_structure 874 882 Upper GI +R24 MODIFY Arg1:T50 Arg2:E24 +T51 Disease_disorder 915 924 gastritis +E25 Disease_disorder:T51 +T52 Biological_structure 908 914 antral +T53 Detailed_description 900 907 erosive +R25 MODIFY Arg1:T52 Arg2:E25 +R26 MODIFY Arg1:T53 Arg2:E25 +T54 Sign_symptom 948 960 inflammation +E26 Sign_symptom:T54 +T55 Detailed_description 937 947 ulcerative +T56 Detailed_description 930 936 patchy +R27 MODIFY Arg1:T55 Arg2:E26 +R28 MODIFY Arg1:T56 Arg2:E26 +T57 Diagnostic_procedure 972 982 ultrasound +E27 Diagnostic_procedure:T57 +T58 Biological_structure 962 971 Abdominal +R29 MODIFY Arg1:T58 Arg2:E27 +T59 Sign_symptom 1001 1009 enlarged +E28 Sign_symptom:T59 +T60 Biological_structure 1010 1015 liver +T61 Severity 992 1000 slightly +R30 MODIFY Arg1:T60 Arg2:E28 +R31 MODIFY Arg1:T61 Arg2:E28 +T62 Sign_symptom 1041 1047 lesion +E29 Sign_symptom:T62 +T63 Shape 1023 1030 rounded +R32 MODIFY Arg1:T63 Arg2:E29 +T64 Detailed_description 1031 1040 echogenic +R33 MODIFY Arg1:T64 Arg2:E29 +T65 Biological_structure 1055 1086 anterior wall of the right lobe +R34 MODIFY Arg1:T65 Arg2:E29 +T66 Disease_disorder 1101 1111 hemangioma +E30 Disease_disorder:T66 +A4 POLARITY E30 MAYBE_POS +T67 Sign_symptom 1137 1145 enlarged +E31 Sign_symptom:T67 +T68 Severity 1128 1136 slightly +T69 Biological_structure 1117 1123 spleen +R35 MODIFY Arg1:T69 Arg2:E31 +R36 MODIFY Arg1:T68 Arg2:E31 +T70 Lab_value 1150 1172 normal in echogenicity +R37 MODIFY Arg1:T70 Arg2:T69 +T71 Sign_symptom 1187 1194 lesions +E32 Sign_symptom:T71 +A5 POLARITY E32 NEG +T72 Detailed_description 1181 1186 focal +R38 MODIFY Arg1:T72 Arg2:E32 +T73 Diagnostic_procedure 1196 1215 Computed Tomography +E33 Diagnostic_procedure:T73 +T74 Diagnostic_procedure 1217 1219 CT +E34 Diagnostic_procedure:T74 +R39 IDENTICAL Arg1:E34 Arg2:E33 +T75 Biological_structure 1233 1240 abdomen +T76 Biological_structure 1245 1251 pelvis +R40 MODIFY Arg1:T75 Arg2:E33 +R41 MODIFY Arg1:T76 Arg2:E33 +T77 Sign_symptom 1299 1303 mass +E35 Sign_symptom:T77 +T78 Detailed_description 1261 1273 fairly large +T79 Detailed_description 1274 1286 well defined +T80 Detailed_description 1287 1298 soft tissue +R42 MODIFY Arg1:T78 Arg2:E35 +R43 MODIFY Arg1:T79 Arg2:E35 +R44 MODIFY Arg1:T80 Arg2:E35 +T81 Biological_structure 1319 1340 anterior upper pelvis +R45 MODIFY Arg1:T81 Arg2:E35 +T82 Sign_symptom 1388 1398 thickening +E36 Sign_symptom:T82 +T83 Biological_structure 1377 1387 bowel wall +R46 MODIFY Arg1:T83 Arg2:E36 +T84 Biological_structure 1355 1368 jejunal loops +R47 MODIFY Arg1:T84 Arg2:E35 +R48 CAUSE Arg1:E35 Arg2:E36 +T85 Diagnostic_procedure 1437 1447 laparotomy +E37 Diagnostic_procedure:T85 +T86 Therapeutic_procedure 1452 1460 excision +E38 Therapeutic_procedure:T86 +T87 Sign_symptom 1476 1480 mass +E39 Sign_symptom:T87 +T88 Biological_structure 1468 1475 jejunal +R49 MODIFY Arg1:T88 Arg2:E39 +T89 Diagnostic_procedure 1482 1505 Macroscopic examination +E40 Diagnostic_procedure:T89 +T90 Volume 1518 1531 11 × 8 × 2 cm +T91 Sign_symptom 1540 1544 mass +E41 Sign_symptom:T91 +R50 MODIFY Arg1:T90 Arg2:E41 +T92 Biological_structure 1532 1539 annular +R51 MODIFY Arg1:T92 Arg2:E41 +T93 Biological_structure 1553 1576 within the jejunal wall +R52 MODIFY Arg1:T93 Arg2:E41 +T94 Biological_structure 1577 1606 ulcerating through the mucosa +T95 Biological_structure 1611 1643 extending to the serosal surface +R53 MODIFY Arg1:T94 Arg2:E41 +R54 MODIFY Arg1:T95 Arg2:E41 +T96 Diagnostic_procedure 1645 1668 Microscopic examination +E42 Diagnostic_procedure:T96 +T97 Sign_symptom 1680 1685 tumor +E43 Sign_symptom:T97 +T98 Biological_structure 1702 1720 muscularis propria +R55 MODIFY Arg1:T98 Arg2:E43 +T99 Biological_structure 1725 1748 extending to the mucosa +T100 Biological_structure 1757 1763 serosa +R56 MODIFY Arg1:T99 Arg2:E43 +R57 MODIFY Arg1:T100 Arg2:E43 +T101 Coreference 1769 1785 neoplastic cells +E44 Coreference:T101 +R58 IDENTICAL Arg1:E44 Arg2:E43 +T102 Shape 1803 1839 predominantly pseudoalveolar pattern +R59 MODIFY Arg1:T102 Arg2:E44 +T103 Coreference 1852 1856 They +E45 Coreference:T103 +R60 IDENTICAL Arg1:E45 Arg2:E44 +T104 Shape 1862 1871 polygonal +R61 MODIFY Arg1:T104 Arg2:E45 +T105 Detailed_description 1886 1936 variable amount of eosinophilic to clear cytoplasm +R62 MODIFY Arg1:T105 Arg2:E45 +T106 Detailed_description 1951 2019 nuclei were oval with vesicular chromatin and inconspicuous nucleoli +R63 MODIFY Arg1:T106 Arg2:E45 +T107 Sign_symptom 2062 2073 giant cells +E46 Sign_symptom:T107 +T108 Detailed_description 2031 2046 osteoclast-like +T109 Detailed_description 2047 2061 multinucleated +T110 Detailed_description 2021 2030 Scattered +R64 MODIFY Arg1:T109 Arg2:E46 +R65 MODIFY Arg1:T108 Arg2:E46 +R66 MODIFY Arg1:T110 Arg2:E46 +T111 Sign_symptom 2136 2144 necrosis +E47 Sign_symptom:T111 +T112 Sign_symptom 2116 2131 mitotic figures +E48 Sign_symptom:T112 +T113 Detailed_description 2107 2115 Frequent +R67 MODIFY Arg1:T113 Arg2:E48 +T114 Sign_symptom 2182 2199 involved by tumor +E49 Sign_symptom:T114 +A6 POLARITY E49 NEG +T115 Biological_structure 2157 2172 All lymph nodes +R68 MODIFY Arg1:T115 Arg2:E49 +T116 Diagnostic_procedure 2201 2222 Immunohistochemically +E50 Diagnostic_procedure:T116 +T117 Diagnostic_procedure 2286 2299 S-100 protein +E51 Diagnostic_procedure:T117 +T118 Lab_value 2273 2281 positive +R69 MODIFY Arg1:T118 Arg2:E51 +T119 Coreference 2228 2244 neoplastic cells +E52 Coreference:T119 +R70 IDENTICAL Arg1:E52 Arg2:E45 +T120 Diagnostic_procedure 2338 2346 vimentin +E53 Diagnostic_procedure:T120 +R71 SUB_PROCEDURE Arg1:E51 Arg2:E50 +T121 Lab_value 2325 2333 positive +R72 SUB_PROCEDURE Arg1:E53 Arg2:E50 +R73 MODIFY Arg1:T121 Arg2:E53 +R74 MODIFY Arg1:E52 Arg2:E50 +T122 Diagnostic_procedure 2348 2367 Melanocytic markers +E54 Diagnostic_procedure:T122 +T123 Diagnostic_procedure 2369 2374 HMB45 +E55 Diagnostic_procedure:T123 +T124 Diagnostic_procedure 2379 2386 Melan A +E56 Diagnostic_procedure:T124 +R75 SUB_PROCEDURE Arg1:E55 Arg2:E54 +R76 SUB_PROCEDURE Arg1:E56 Arg2:E54 +T125 Diagnostic_procedure 2389 2411 neuroendocrine markers +E57 Diagnostic_procedure:T125 +T126 Diagnostic_procedure 2413 2427 chromogranin A +E58 Diagnostic_procedure:T126 +T127 Diagnostic_procedure 2429 2442 synaptophysin +E59 Diagnostic_procedure:T127 +T128 Diagnostic_procedure 2447 2451 CD56 +E60 Diagnostic_procedure:T128 +T129 Diagnostic_procedure 2454 2473 smooth muscle actin +E61 Diagnostic_procedure:T129 +T130 Diagnostic_procedure 2475 2481 desmin +E62 Diagnostic_procedure:T130 +T131 Diagnostic_procedure 2483 2487 CD34 +E63 Diagnostic_procedure:T131 +T132 Diagnostic_procedure 2489 2494 CD117 +E64 Diagnostic_procedure:T132 +T133 Diagnostic_procedure 2496 2507 cytokeratin +E65 Diagnostic_procedure:T133 +T134 Diagnostic_procedure 2512 2515 LCA +E66 Diagnostic_procedure:T134 +T135 Lab_value 2525 2533 negative +T136 Coreference 2541 2557 neoplastic cells +E67 Coreference:T136 +R77 IDENTICAL Arg1:E67 Arg2:E52 +R78 SUB_PROCEDURE Arg1:E58 Arg2:E57 +R79 SUB_PROCEDURE Arg1:E59 Arg2:E57 +R80 MODIFY Arg1:T135 Arg2:E66 +R81 MODIFY Arg1:T135 Arg2:E65 +R82 MODIFY Arg1:T135 Arg2:E64 +R83 MODIFY Arg1:T135 Arg2:E63 +R84 MODIFY Arg1:T135 Arg2:E62 +R85 MODIFY Arg1:T135 Arg2:E61 +R86 MODIFY Arg1:T135 Arg2:E60 +R87 MODIFY Arg1:T135 Arg2:E59 +R88 MODIFY Arg1:T135 Arg2:E58 +R89 MODIFY Arg1:T135 Arg2:E56 +R90 MODIFY Arg1:T135 Arg2:E55 +T137 Diagnostic_procedure 2559 2592 Fluorescein in situ hybridization +E68 Diagnostic_procedure:T137 +T138 Diagnostic_procedure 2594 2598 FISH +E69 Diagnostic_procedure:T138 +R91 IDENTICAL Arg1:E69 Arg2:E68 +T139 Detailed_description 2613 2636 EWSR1 break apart probe +T140 Detailed_description 2640 2663 paraffin-embedded tumor +R92 MODIFY Arg1:T139 Arg2:E68 +R93 MODIFY Arg1:T140 Arg2:E68 +T141 Sign_symptom 2685 2704 22q12 rearrangement +E70 Sign_symptom:T141 +T142 Lab_value 2708 2749 197 out of 205 (96%) of interphase nuclei +R94 MODIFY Arg1:T142 Arg2:E70 +T143 Medication 3006 3018 chemotherapy +E71 Medication:T143 +A7 POLARITY E71 NEG +T144 Therapeutic_procedure 3022 3034 radiotherapy +E72 Therapeutic_procedure:T144 +A8 POLARITY E72 NEG +T145 Clinical_event 3056 3065 follow up +E73 Clinical_event:T145 +T146 Sign_symptom 3088 3100 disease free +E74 Sign_symptom:T146 +T147 Duration 3105 3112 3 years +E75 Duration:T147 +T148 Clinical_event 3122 3131 presented +E76 Clinical_event:T148 +T149 Sign_symptom 3143 3153 recurrence +E77 Sign_symptom:T149 +T150 Detailed_description 3137 3142 local +R95 MODIFY Arg1:T150 Arg2:E77 +T151 Therapeutic_procedure 3187 3196 resection +E78 Therapeutic_procedure:T151 +A9 POLARITY E78 NEG +T152 Nonbiological_location 3240 3261 different institution +T153 Clinical_event 3213 3234 sought medical advice +E79 Clinical_event:T153 +R96 MODIFY Arg1:T152 Arg2:E79 +T154 Outcome 3271 3275 died +E80 Outcome:T154 +T155 Date 3291 3303 a year later +E81 Date:T155 +* OVERLAP E1 E2 +R97 AFTER Arg1:E2 Arg2:E3 +T156 Clinical_event 163 172 presented +E82 Clinical_event:T156 +* OVERLAP E3 E82 E4 E5 E6 E7 +R98 AFTER Arg1:E7 Arg2:E8 +* OVERLAP E8 E9 +R99 BEFORE Arg1:E9 Arg2:E10 +* OVERLAP E10 E11 E12 E13 E14 E15 E16 E17 E18 E19 E20 E21 E22 E23 E24 E25 E26 E27 E28 E29 E30 E31 E32 E33 E35 E36 +R100 BEFORE Arg1:E36 Arg2:E37 +* OVERLAP E37 E38 E39 E40 E41 E42 E43 E46 E48 E47 E49 E50 E54 E57 E60 E61 E62 E63 E64 E65 E66 E68 E70 +R101 BEFORE Arg1:E70 Arg2:E71 +* OVERLAP E71 E72 +R102 BEFORE Arg1:E72 Arg2:E73 +* OVERLAP E73 E74 E75 +R103 BEFORE Arg1:E75 Arg2:E76 +* OVERLAP E76 E77 E78 +R104 BEFORE Arg1:E78 Arg2:E79 +* OVERLAP E79 E80 E81