--- a +++ b/processing/MACCROBAT/28296749.ann @@ -0,0 +1,205 @@ +T1 Age 2 13 64-year-old +T2 Sex 14 17 man +T3 Clinical_event 22 30 admitted +E1 Clinical_event:T3 +T4 Nonbiological_location 38 68 Department of Gastroenterology +T5 Nonbiological_location 76 150 Affiliated Hospital of Qingdao University Medical College (Qingdao, China) +R1 MODIFY Arg1:T4 Arg2:T5 +R2 MODIFY Arg1:T5 Arg2:E1 +T6 Sign_symptom 169 174 pains +E2 Sign_symptom:T6 +T7 Biological_structure 158 168 epigastric +R3 MODIFY Arg1:T7 Arg2:E2 +T8 Diagnostic_procedure 176 196 Physical examination +E3 Diagnostic_procedure:T8 +T9 Sign_symptom 218 222 mass +E4 Sign_symptom:T9 +A1 POLARITY E4 NEG +T10 Sign_symptom 224 239 lymphadenopathy +E5 Sign_symptom:T10 +A2 POLARITY E5 NEG +T11 Sign_symptom 244 256 organomegaly +E6 Sign_symptom:T11 +A3 POLARITY E6 NEG +T12 Diagnostic_procedure 261 270 endoscopy +E7 Diagnostic_procedure:T12 +T13 Sign_symptom 291 298 lesions +E8 Sign_symptom:T13 +T14 Detailed_description 272 279 several +T15 Biological_structure 280 290 submucosal +R4 MODIFY Arg1:T15 Arg2:E8 +R5 MODIFY Arg1:T14 Arg2:E8 +T16 Biological_structure 322 336 gastric antrum +T17 Biological_structure 345 358 duodenal bulb +R6 MODIFY Arg1:T16 Arg2:E8 +R7 MODIFY Arg1:T17 Arg2:E8 +T18 Diagnostic_procedure 368 394 Endoscopic ultrasonography +E9 Diagnostic_procedure:T18 +T19 Diagnostic_procedure 396 399 EUS +E10 Diagnostic_procedure:T19 +R8 IDENTICAL Arg1:E10 Arg2:E9 +T20 Detailed_description 402 420 OLYMPUS EUS EU-ME2 +T21 Detailed_description 422 442 Miniprobe sonography +R9 MODIFY Arg1:T20 Arg2:E9 +R10 MODIFY Arg1:T21 Arg2:E9 +T22 Sign_symptom 466 473 lesions +E11 Sign_symptom:T22 +T23 Distance 479 492 almost 0.5-cm +T24 Detailed_description 507 517 hypoechoic +T25 Sign_symptom 518 527 neoplasms +E12 Sign_symptom:T25 +R11 MODIFY Arg1:T24 Arg2:E12 +R12 MODIFY Arg1:T23 Arg2:E12 +T26 Biological_structure 549 564 submucous layer +R13 MODIFY Arg1:T26 Arg2:E12 +T27 Disease_disorder 613 634 neuroendocrine tumors +E13 Disease_disorder:T27 +T28 Biological_structure 603 612 digestive +R14 MODIFY Arg1:T28 Arg2:E13 +T29 Diagnostic_procedure 636 655 Computed tomography +E14 Diagnostic_procedure:T29 +T30 Sign_symptom 665 685 enlarged lymph nodes +E15 Sign_symptom:T30 +T31 Biological_structure 707 718 mediastinal +T32 Biological_structure 720 735 retroperitoneal +T33 Biological_structure 737 747 mesenteric +T34 Biological_structure 753 761 inguinal +R15 MODIFY Arg1:T31 Arg2:E15 +R16 MODIFY Arg1:T32 Arg2:E15 +R17 MODIFY Arg1:T33 Arg2:E15 +R18 MODIFY Arg1:T34 Arg2:E15 +T35 Sign_symptom 781 788 nodules +E16 Sign_symptom:T35 +T36 Detailed_description 767 780 intracavitary +R19 MODIFY Arg1:T36 Arg2:E16 +T37 Biological_structure 796 804 duodenum +R20 MODIFY Arg1:T37 Arg2:E16 +A4 POLARITY E13 MAYBE_POS +T38 Diagnostic_procedure 868 871 EUS +E17 Diagnostic_procedure:T38 +T39 Diagnostic_procedure 876 882 biopsy +E18 Diagnostic_procedure:T39 +T40 Diagnostic_procedure 901 910 endoscopy +E19 Diagnostic_procedure:T40 +T41 Biological_structure 946 960 terminal ileum +T42 Sign_symptom 923 938 columnar uplift +E20 Sign_symptom:T42 +T43 Area 914 922 2 × 1-cm +R22 MODIFY Arg1:T43 Arg2:E20 +T44 Sign_symptom 985 992 lesions +E21 Sign_symptom:T44 +T45 Biological_structure 1000 1006 rectum +R23 MODIFY Arg1:T45 Arg2:E21 +T46 Biological_structure 974 984 submucosal +T47 Detailed_description 965 973 multiple +R24 MODIFY Arg1:T46 Arg2:E21 +R25 MODIFY Arg1:T47 Arg2:E21 +T49 Sign_symptom 1054 1061 lesions +E23 Sign_symptom:T49 +T50 Biological_structure 1069 1083 terminal ileum +R26 MODIFY Arg1:T50 Arg2:E23 +R27 MODIFY Arg1:T41 Arg2:E20 +T48 Diagnostic_procedure 1032 1035 EUS +E22 Diagnostic_procedure:T48 +R21 SUB_PROCEDURE Arg1:E19 Arg2:E17 +T51 Area 1095 1107 1.6 × 1.2 cm +R28 MODIFY Arg1:T51 Arg2:E23 +T52 Sign_symptom 1116 1123 lesions +E24 Sign_symptom:T52 +T53 Biological_structure 1131 1137 rectum +R29 MODIFY Arg1:T53 Arg2:E24 +T54 Area 1156 1168 0.6 × 1.0 cm +R30 MODIFY Arg1:T54 Arg2:E24 +T55 Detailed_description 1184 1208 homogeneously hypoechoic +T56 Detailed_description 1213 1256 originated from the muscularis mucosa layer +R31 MODIFY Arg1:T55 Arg2:E24 +R32 MODIFY Arg1:T56 Arg2:E24 +T57 Diagnostic_procedure 1258 1282 Pathological examination +E25 Diagnostic_procedure:T57 +T58 Sign_symptom 1318 1325 lesions +E26 Sign_symptom:T58 +T59 Biological_structure 1333 1339 rectum +R33 MODIFY Arg1:T59 Arg2:E26 +T60 Detailed_description 1355 1381 lymphomatous proliferation +R34 MODIFY Arg1:T60 Arg2:E26 +T61 Detailed_description 1386 1404 dense infiltration +R35 MODIFY Arg1:T61 Arg2:E26 +T62 Biological_structure 1408 1471 monomorphic, small cleaved cells with irregularly shaped nuclei +R36 MODIFY Arg1:T62 Arg2:T61 +T63 Diagnostic_procedure 1484 1512 immunohistochemical analysis +E27 Diagnostic_procedure:T63 +T64 Diagnostic_procedure 1542 1551 cyclin D1 +E28 Diagnostic_procedure:T64 +T65 Diagnostic_procedure 1553 1557 CD20 +E29 Diagnostic_procedure:T65 +T66 Diagnostic_procedure 1559 1563 CD21 +E30 Diagnostic_procedure:T66 +T67 Diagnostic_procedure 1565 1571 SOX-11 +E31 Diagnostic_procedure:T67 +T68 Diagnostic_procedure 1577 1582 Bcl-2 +E32 Diagnostic_procedure:T68 +T69 Diagnostic_procedure 1601 1604 CD3 +E33 Diagnostic_procedure:T69 +T70 Diagnostic_procedure 1609 1613 CD10 +E34 Diagnostic_procedure:T70 +T71 Lab_value 1529 1537 positive +T72 Lab_value 1588 1596 negative +T73 Disease_disorder 1658 1661 MCL +E35 Disease_disorder:T73 +#1 AnnotatorNotes E35 Mantle cell lymphoma +R37 MODIFY Arg1:T71 Arg2:E28 +R38 MODIFY Arg1:T71 Arg2:E29 +R39 MODIFY Arg1:T71 Arg2:E30 +R40 MODIFY Arg1:T71 Arg2:E31 +R41 MODIFY Arg1:T71 Arg2:E32 +R42 MODIFY Arg1:T72 Arg2:E33 +R43 MODIFY Arg1:T72 Arg2:E34 +R44 SUB_PROCEDURE Arg1:E28 Arg2:E27 +R45 SUB_PROCEDURE Arg1:E29 Arg2:E27 +R46 SUB_PROCEDURE Arg1:E30 Arg2:E27 +R47 SUB_PROCEDURE Arg1:E31 Arg2:E27 +R48 SUB_PROCEDURE Arg1:E32 Arg2:E27 +R49 SUB_PROCEDURE Arg1:E33 Arg2:E27 +R50 SUB_PROCEDURE Arg1:E34 Arg2:E27 +T74 Diagnostic_procedure 1663 1677 Ki-67 staining +E36 Diagnostic_procedure:T74 +T75 Lab_value 1689 1715 proliferative index of 30% +R51 MODIFY Arg1:T75 Arg2:E36 +T76 Disease_disorder 1778 1781 MCL +E37 Disease_disorder:T76 +T77 Lab_value 1759 1777 Ann Arbor stage IV +R52 MODIFY Arg1:T77 Arg2:E37 +T78 Medication 1838 1850 chemotherapy +E38 Medication:T78 +T79 Medication 1856 1865 rituximab +E39 Medication:T79 +T80 Medication 1867 1883 cyclophosphamide +E40 Medication:T80 +T81 Medication 1885 1896 doxorubicin +E41 Medication:T81 +T82 Medication 1898 1909 vincristine +E42 Medication:T82 +T83 Medication 1915 1925 prednisone +E43 Medication:T83 +T84 Medication 1927 1941 R-CHOP regimen +E44 Medication:T84 +R53 SUB_PROCEDURE Arg1:E39 Arg2:E38 +R54 SUB_PROCEDURE Arg1:E39 Arg2:E44 +R55 SUB_PROCEDURE Arg1:E40 Arg2:E38 +R56 SUB_PROCEDURE Arg1:E41 Arg2:E38 +R57 SUB_PROCEDURE Arg1:E42 Arg2:E38 +R58 SUB_PROCEDURE Arg1:E43 Arg2:E38 +R59 SUB_PROCEDURE Arg1:E40 Arg2:E44 +R60 SUB_PROCEDURE Arg1:E41 Arg2:E44 +R61 SUB_PROCEDURE Arg1:E42 Arg2:E44 +R62 SUB_PROCEDURE Arg1:E43 Arg2:E44 +T85 Sign_symptom 1968 1977 remission +E45 Sign_symptom:T85 +* OVERLAP E5 E6 E7 E8 E4 E3 E9 E11 E12 E13 E14 E15 E16 +R63 BEFORE Arg1:E2 Arg2:E3 +R64 BEFORE Arg1:E16 Arg2:E17 +T86 Detailed_description 861 867 repeat +R65 MODIFY Arg1:T86 Arg2:E17 +* OVERLAP E17 E18 E20 E21 E22 E23 E24 E25 E26 E27 E35 E36 E37 +R66 BEFORE Arg1:E37 Arg2:E38 +R67 BEFORE Arg1:E38 Arg2:E45