--- a +++ b/processing/MACCROBAT/28190872.ann @@ -0,0 +1,340 @@ +T1 Age 2 13 37-year-old +T2 Personal_background 14 30 African American +T3 Sex 31 37 female +T4 Disease_disorder 90 101 sarcoidosis +E1 Disease_disorder:T4 +T5 History 82 101 stage 1 sarcoidosis +T6 Lab_value 82 89 stage 1 +R1 MODIFY Arg1:T6 Arg2:E1 +T7 Clinical_event 102 111 presented +E2 Clinical_event:T7 +T8 Nonbiological_location 119 127 facility +R2 MODIFY Arg1:T8 Arg2:E2 +T9 Sign_symptom 154 173 shortness of breath +E3 Sign_symptom:T9 +T10 Date 175 190 Ten years prior +E4 Date:T10 +T11 Clinical_event 196 205 presented +E5 Clinical_event:T11 +T12 Disease_disorder 221 228 uveitis +E6 Disease_disorder:T12 +T13 Detailed_description 211 220 bilateral +R3 MODIFY Arg1:T13 Arg2:E6 +T14 Sign_symptom 233 245 lupus pernio +E7 Sign_symptom:T14 +T15 Sign_symptom 247 249 LP +E8 Sign_symptom:T15 +R4 IDENTICAL Arg1:E8 Arg2:E7 +T16 Biological_structure 258 267 right ear +R5 MODIFY Arg1:T16 Arg2:E7 +T17 Disease_disorder 304 315 sarcoidosis +E9 Disease_disorder:T17 +T18 Therapeutic_procedure 338 345 treated +E10 Therapeutic_procedure:T18 +T19 Lab_value 325 337 successfully +R6 MODIFY Arg1:T19 Arg2:E10 +T20 Disease_disorder 375 386 sarcoidosis +E11 Disease_disorder:T20 +T21 Lab_value 396 405 quiescent +R7 MODIFY Arg1:T21 Arg2:E11 +T22 Date 412 427 three years ago +E12 Date:T22 +T23 Nonbiological_location 441 460 outside institution +T24 Clinical_event 470 480 discovered +E13 Clinical_event:T24 +R8 MODIFY Arg1:T23 Arg2:E13 +T25 Sign_symptom 499 510 involvement +E14 Sign_symptom:T25 +T26 Biological_structure 489 498 laryngeal +R9 MODIFY Arg1:T26 Arg2:E14 +T27 Therapeutic_procedure 520 527 treated +E15 Therapeutic_procedure:T27 +T28 Medication 533 543 prednisone +E16 Medication:T28 +T29 Dosage 544 555 60 mg daily +R10 MODIFY Arg1:T29 Arg2:E16 +R11 SUB_PROCEDURE Arg1:E16 Arg2:E15 +T30 Duration 560 574 several months +E17 Duration:T30 +R12 MODIFY Arg1:E17 Arg2:E16 +T31 Dosage 601 612 10 mg daily +R13 MODIFY Arg1:T31 Arg2:E16 +T32 Date 579 589 eventually +E18 Date:T32 +R14 MODIFY Arg1:E18 Arg2:T31 +T33 Disease_disorder 618 629 sarcoidosis +E19 Disease_disorder:T33 +T34 Lab_value 639 654 well-controlled +R15 MODIFY Arg1:T34 Arg2:E19 +T35 Medication 683 693 prednisone +E20 Medication:T35 +T36 Date 700 716 six months prior +E21 Date:T36 +T37 Medication 758 768 prednisone +E22 Medication:T37 +A1 POLARITY E22 NEG +T38 Lab_value 736 753 self-discontinued +R16 MODIFY Arg1:T38 Arg2:E22 +T39 Medication 807 827 Nopalea cactus juice +E23 Medication:T39 +T40 Therapeutic_procedure 785 806 homeopathic treatment +E24 Therapeutic_procedure:T40 +R17 SUB_PROCEDURE Arg1:E23 Arg2:E24 +T41 Sign_symptom 929 936 dyspnea +E25 Sign_symptom:T41 +T42 Detailed_description 937 948 on exertion +R18 MODIFY Arg1:T42 Arg2:E25 +T43 Sign_symptom 964 971 dyspnea +E26 Sign_symptom:T43 +T44 Detailed_description 972 979 at rest +R19 MODIFY Arg1:T44 Arg2:E26 +T47 Sign_symptom 1076 1097 difficulty swallowing +E28 Sign_symptom:T47 +T48 Frequency 1055 1063 frequent +R21 MODIFY Arg1:T48 Arg2:E28 +T49 Nonbiological_location 1106 1126 emergency department +T50 Diagnostic_procedure 1132 1152 physical examination +E29 Diagnostic_procedure:T50 +R22 MODIFY Arg1:T49 Arg2:E29 +T51 Sign_symptom 1172 1192 respiratory distress +E30 Sign_symptom:T51 +T52 Sign_symptom 1215 1234 inspiratory stridor +E31 Sign_symptom:T52 +T53 Sign_symptom 1239 1249 hoarseness +E32 Sign_symptom:T53 +T54 Sign_symptom 1293 1300 lesions +E33 Sign_symptom:T54 +T55 Lab_value 1283 1292 indurated +T56 Lab_value 1264 1281 chronic-appearing +R23 MODIFY Arg1:T56 Arg2:E33 +R24 MODIFY Arg1:T55 Arg2:E33 +T57 Biological_structure 1308 1317 right ear +R25 MODIFY Arg1:T57 Arg2:E33 +T58 Disease_disorder 1347 1367 upper airway disease +E34 Disease_disorder:T58 +A2 POLARITY E34 MAYBE_POS +T59 Diagnostic_procedure 1423 1435 laryngoscopy +E35 Diagnostic_procedure:T59 +T60 Detailed_description 1415 1422 bedside +T61 Detailed_description 1406 1414 emergent +R26 MODIFY Arg1:T60 Arg2:E35 +R27 MODIFY Arg1:T61 Arg2:E35 +T62 Disease_disorder 1382 1401 respiratory failure +E36 Disease_disorder:T62 +A3 POLARITY E36 UNCERTAIN +T63 Lab_value 1372 1381 impending +R28 MODIFY Arg1:T63 Arg2:E36 +T64 Disease_disorder 1464 1474 obstructed +E37 Disease_disorder:T64 +T65 Biological_structure 1475 1481 airway +R29 MODIFY Arg1:T65 Arg2:E37 +T45 Sign_symptom 1028 1034 hoarse +E27 Sign_symptom:T45 +A4 TREND E27 INC +T46 Activity 1002 1007 voice +E38 Activity:T46 +R20 MODIFY Arg1:E27 Arg2:E38 +T66 Sign_symptom 1502 1513 retroflexed +E39 Sign_symptom:T66 +T67 Biological_structure 1491 1501 epiglottis +R30 MODIFY Arg1:T67 Arg2:E39 +T68 Biological_structure 1523 1530 glottis +R31 MODIFY Arg1:T68 Arg2:E39 +T69 Sign_symptom 1547 1552 edema +E40 Sign_symptom:T69 +T70 Lab_value 1535 1546 significant +R32 MODIFY Arg1:T70 Arg2:E40 +T71 Biological_structure 1560 1570 arytenoids +T72 Biological_structure 1575 1594 aryepiglottic folds +R33 MODIFY Arg1:T71 Arg2:E40 +R34 MODIFY Arg1:T72 Arg2:E40 +T73 Medication 1651 1664 dexamethasone +E41 Medication:T73 +T74 Administration 1639 1650 intravenous +T75 Dosage 1629 1638 high-dose +R35 MODIFY Arg1:T74 Arg2:E41 +R36 MODIFY Arg1:T75 Arg2:E41 +T76 Clinical_event 1669 1674 taken +E42 Clinical_event:T76 +T77 Nonbiological_location 1693 1707 operating room +R37 MODIFY Arg1:T77 Arg2:E42 +T78 Nonbiological_location 1709 1711 OR +R38 IDENTICAL Arg1:T78 Arg2:T77 +T79 Disease_disorder 1772 1783 obstruction +E43 Disease_disorder:T79 +T80 Biological_structure 1759 1771 upper airway +T81 Lab_value 1750 1758 complete +R39 MODIFY Arg1:T81 Arg2:E43 +R40 MODIFY Arg1:T80 Arg2:E43 +T82 Therapeutic_procedure 1716 1722 secure +E44 Therapeutic_procedure:T82 +T83 Biological_structure 1727 1733 airway +R41 MODIFY Arg1:T83 Arg2:E44 +T84 Diagnostic_procedure 1810 1830 direct visualization +E45 Diagnostic_procedure:T84 +T85 Biological_structure 1838 1844 larynx +R42 MODIFY Arg1:T85 Arg2:E45 +T86 Nonbiological_location 1852 1854 OR +R43 MODIFY Arg1:T86 Arg2:E45 +T87 Therapeutic_procedure 1864 1873 intubated +E46 Therapeutic_procedure:T87 +T88 Therapeutic_procedure 1880 1895 surgical airway +E47 Therapeutic_procedure:T88 +R44 SUB_PROCEDURE Arg1:E46 Arg2:E47 +T89 Diagnostic_procedure 1914 1922 biopsies +E48 Diagnostic_procedure:T89 +T90 Biological_structure 1955 1965 epiglottis +R45 MODIFY Arg1:T90 Arg2:E48 +T91 Biological_structure 1932 1947 lingual surface +R46 MODIFY Arg1:T91 Arg2:T90 +T92 Therapeutic_procedure 1987 1999 tracheostomy +E49 Therapeutic_procedure:T92 +T93 Detailed_description 1979 1985 Shiley +T94 Detailed_description 1969 1978 #4 cuffed +R47 MODIFY Arg1:T93 Arg2:E49 +R48 MODIFY Arg1:T94 Arg2:E49 +T95 Diagnostic_procedure 2016 2034 respiratory status +E50 Diagnostic_procedure:T95 +T96 Lab_value 2047 2057 stabilized +R49 MODIFY Arg1:T96 Arg2:E50 +T97 Therapeutic_procedure 2063 2072 extubated +E51 Therapeutic_procedure:T97 +T98 Clinical_event 2078 2089 transferred +E52 Clinical_event:T98 +T99 Nonbiological_location 2097 2124 medical intensive care unit +R50 MODIFY Arg1:T99 Arg2:E52 +T100 Therapeutic_procedure 2130 2142 tracheostomy +E53 Therapeutic_procedure:T100 +T101 Detailed_description 2174 2180 Shiley +T102 Detailed_description 2162 2173 #4 cuffless +R51 MODIFY Arg1:T102 Arg2:E53 +R52 MODIFY Arg1:T101 Arg2:E53 +T103 Date 2198 2203 day 5 +E54 Date:T103 +T104 Medication 2260 2273 dexamethasone +E55 Medication:T104 +A5 POLARITY E55 NEG +T105 Medication 2277 2287 prednisone +E56 Medication:T105 +T106 Dosage 2288 2299 60 mg daily +R53 MODIFY Arg1:T106 Arg2:E56 +T107 Administration 2248 2259 intravenous +R54 MODIFY Arg1:T107 Arg2:E55 +T108 Diagnostic_procedure 2301 2309 Biopsies +E57 Diagnostic_procedure:T108 +T109 Sign_symptom 2358 2368 granulomas +E58 Sign_symptom:T109 +T110 Disease_disorder 2385 2396 sarcoidosis +E59 Disease_disorder:T110 +T111 Detailed_description 2346 2357 epithelioid +T112 Detailed_description 2330 2345 non-necrotizing +R55 MODIFY Arg1:T111 Arg2:E58 +R56 MODIFY Arg1:T112 Arg2:E58 +T113 Dosage 2433 2442 high-dose +T114 Medication 2443 2453 prednisone +E60 Medication:T114 +T115 Duration 2458 2470 three months +E61 Duration:T115 +T116 Clinical_event 2538 2548 discharged +E62 Clinical_event:T116 +T117 Nonbiological_location 2549 2553 home +R57 MODIFY Arg1:T117 Arg2:E62 +T118 Therapeutic_procedure 2506 2528 self-tracheostomy care +E63 Therapeutic_procedure:T118 +T119 Clinical_event 2492 2501 education +E64 Clinical_event:T119 +R58 MODIFY Arg1:E63 Arg2:E64 +T120 Date 2573 2582 one-month +E65 Date:T120 +T121 Date 2587 2598 three-month +E66 Date:T121 +T122 Clinical_event 2599 2608 follow-up +E67 Clinical_event:T122 +T123 Sign_symptom 2640 2658 respiratory issues +E68 Sign_symptom:T123 +A6 POLARITY E68 NEG +T124 Diagnostic_procedure 2667 2681 laryngoscopies +E69 Diagnostic_procedure:T124 +T125 Lab_value 2701 2712 improvement +R59 MODIFY Arg1:T125 Arg2:E69 +T126 Sign_symptom 2720 2725 edema +E70 Sign_symptom:T126 +A7 POLARITY E70 MAYBE_NEG +T127 Biological_structure 2733 2743 arytenoids +R60 MODIFY Arg1:T127 Arg2:E70 +T128 Biological_structure 2748 2767 aryepiglottic folds +R61 MODIFY Arg1:T128 Arg2:E70 +T129 Disease_disorder 2801 2808 obscure +E71 Disease_disorder:T129 +T130 Biological_structure 2777 2787 epiglottis +R62 MODIFY Arg1:T130 Arg2:E71 +T131 Biological_structure 2813 2820 glottis +R63 MODIFY Arg1:T131 Arg2:E71 +T132 Medication 2852 2862 prednisone +E72 Medication:T132 +T133 Dosage 2842 2851 high-dose +R64 MODIFY Arg1:T133 Arg2:E72 +T134 Medication 2864 2876 Methotrexate +E73 Medication:T134 +T135 Medication 2897 2907 prednisone +E74 Medication:T135 +T136 Dosage 2923 2934 10 mg daily +R65 MODIFY Arg1:T136 Arg2:E74 +T137 Medication 2973 2983 prednisone +E75 Medication:T137 +T138 Dosage 3008 3019 20 mg daily +R66 MODIFY Arg1:T138 Arg2:E75 +T139 Therapeutic_procedure 3058 3076 surgical treatment +E76 Therapeutic_procedure:T139 +A8 POLARITY E76 NEG +T140 Therapeutic_procedure 3125 3150 immunosuppressive therapy +E77 Therapeutic_procedure:T140 +T141 Therapeutic_procedure 3101 3119 medical management +E78 Therapeutic_procedure:T141 +R67 SUB_PROCEDURE Arg1:E77 Arg2:E78 +R68 BEFORE Arg1:E1 Arg2:E2 +* OVERLAP E2 E3 +R69 AFTER Arg1:E3 Arg2:E4 +* OVERLAP E4 E5 E6 E7 E9 +R70 BEFORE Arg1:E9 Arg2:E10 +* OVERLAP E10 E11 +R71 BEFORE Arg1:E11 Arg2:E12 +* OVERLAP E12 E13 E14 +R72 BEFORE Arg1:E14 Arg2:E15 +* OVERLAP E15 E17 E18 +R73 BEFORE Arg1:E18 Arg2:E19 +* OVERLAP E19 E20 +T142 Dosage 663 679 maintenance dose +R74 MODIFY Arg1:T142 Arg2:E20 +R75 BEFORE Arg1:E20 Arg2:E21 +* OVERLAP E21 E22 E24 +R76 BEFORE Arg1:E24 Arg2:E25 +R77 BEFORE Arg1:E25 Arg2:E26 +* OVERLAP E26 E38 E27 E28 +R78 BEFORE Arg1:E28 Arg2:E29 +* OVERLAP E29 E30 E31 E32 E33 E34 E36 E35 E37 E39 E40 +R79 BEFORE Arg1:E40 Arg2:E41 +R80 BEFORE Arg1:E41 Arg2:E42 +* OVERLAP E42 E44 E43 E45 E46 E48 E49 +R81 BEFORE Arg1:E49 Arg2:E50 +* OVERLAP E50 E51 +R82 BEFORE Arg1:E51 Arg2:E52 +R83 BEFORE Arg1:E52 Arg2:E53 +* OVERLAP E53 E54 E55 E56 +R84 BEFORE Arg1:E56 Arg2:E57 +* OVERLAP E57 E58 E59 +R85 BEFORE Arg1:E59 Arg2:E60 +R86 MODIFY Arg1:T113 Arg2:E60 +* OVERLAP E60 E61 +R87 BEFORE Arg1:E61 Arg2:E64 +R88 BEFORE Arg1:E64 Arg2:E62 +R89 BEFORE Arg1:E62 Arg2:E65 +R90 MODIFY Arg1:E65 Arg2:E67 +R91 MODIFY Arg1:E66 Arg2:E67 +R92 BEFORE Arg1:E65 Arg2:E66 +* OVERLAP E66 E68 E69 E70 E71 E72 +R93 BEFORE Arg1:E72 Arg2:E73 +* OVERLAP E73 E74 +R94 BEFORE Arg1:E74 Arg2:E75 +R95 BEFORE Arg1:E75 Arg2:E76 +* OVERLAP E76 E78