--- a +++ b/processing/MACCROBAT/28121940.ann @@ -0,0 +1,170 @@ +T1 Disease_disorder 135 140 NSCLC +E1 Disease_disorder:T1 +#1 AnnotatorNotes E1 Non-small cell lung cancer +T2 Detailed_description 126 134 squamous +R1 MODIFY Arg1:T2 Arg2:E1 +T3 Detailed_description 106 116 Stage IIIB +T4 Detailed_description 118 124 T4N2M0 +R2 MODIFY Arg1:T4 Arg2:E1 +R3 MODIFY Arg1:T3 Arg2:E1 +T5 Age 2 13 68-year-old +T6 Sex 14 20 female +T7 History 21 27 smoker +T8 History 46 64 pulmonary embolism +T9 History 69 86 diabetes mellitus +T10 Therapeutic_procedure 172 189 chemoradiotherapy +E2 Therapeutic_procedure:T10 +T11 Detailed_description 161 171 definitive +R4 MODIFY Arg1:T11 Arg2:E2 +T12 Medication 195 204 cisplatin +E3 Medication:T12 +T13 Medication 209 220 vinorelbine +E4 Medication:T13 +R5 SUB_PROCEDURE Arg1:E3 Arg2:E2 +R6 SUB_PROCEDURE Arg1:E4 Arg2:E2 +T14 Date 221 241 until September 2014 +E5 Date:T14 +T15 Date 243 258 In October 2014 +E6 Date:T15 +T16 Diagnostic_procedure 260 308 positron emission tomography–computed tomography +E7 Diagnostic_procedure:T16 +T17 Diagnostic_procedure 309 317 (PET-CT) +E8 Diagnostic_procedure:T17 +R7 IDENTICAL Arg1:E8 Arg2:E7 +T18 Lab_value 338 351 good response +R8 MODIFY Arg1:T18 Arg2:E7 +T19 Biological_structure 359 373 primary lesion +R9 MODIFY Arg1:T19 Arg2:T18 +T20 Sign_symptom 388 398 metastases +E9 Sign_symptom:T20 +T21 Biological_structure 406 425 right adrenal gland +R10 MODIFY Arg1:T21 Arg2:E9 +T22 Biological_structure 430 441 right femur +R11 MODIFY Arg1:T22 Arg2:E9 +T23 Therapeutic_procedure 461 471 irradiated +E10 Therapeutic_procedure:T23 +T24 Date 472 488 in November 2014 +E11 Date:T24 +T25 Sign_symptom 578 588 metastases +E12 Sign_symptom:T25 +T26 Date 490 503 A month later +E13 Date:T26 +T27 Biological_structure 565 577 subcutaneous +T28 Detailed_description 547 555 multiple +T29 Biological_structure 556 560 bone +R12 MODIFY Arg1:T27 Arg2:E12 +R13 MODIFY Arg1:T29 Arg2:E12 +R14 MODIFY Arg1:T28 Arg2:E12 +T30 Sign_symptom 638 645 dyspnea +E14 Sign_symptom:T30 +T31 Therapeutic_procedure 654 670 oxygen-dependent +E15 Therapeutic_procedure:T31 +T32 Severity 631 637 severe +R15 MODIFY Arg1:T32 Arg2:E14 +T33 Dosage 685 694 one cycle +T34 Medication 698 709 carboplatin +E16 Medication:T34 +T35 Medication 714 725 gemcitabine +E17 Medication:T35 +T36 Severity 738 744 severe +T37 Sign_symptom 745 757 pancytopenia +E18 Sign_symptom:T37 +R16 MODIFY Arg1:T36 Arg2:E18 +R17 MODIFY Arg1:T33 Arg2:E16 +R18 MODIFY Arg1:T33 Arg2:E17 +T38 Medication 789 798 nivolumab +E19 Medication:T38 +T39 Dosage 799 815 3 mg/kg q14 days +R19 MODIFY Arg1:T39 Arg2:E19 +T40 Date 816 831 in January 2015 +E20 Date:T40 +T41 Date 833 876 One week after the first cycle of nivolumab +E21 Date:T41 +T42 Medication 867 876 nivolumab +E22 Medication:T42 +T43 Sign_symptom 893 899 lesion +E23 Sign_symptom:T43 +T44 Biological_structure 880 892 subcutaneous +R20 MODIFY Arg1:T44 Arg2:E23 +T45 Biological_structure 907 917 upper back +R21 MODIFY Arg1:T45 Arg2:E23 +T46 Detailed_description 918 936 grew substantially +R22 MODIFY Arg1:T46 Arg2:E23 +T47 Sign_symptom 960 964 pain +E24 Sign_symptom:T47 +T48 Sign_symptom 981 1002 inflammatory reaction +E25 Sign_symptom:T48 +T49 Severity 953 959 severe +T50 Severity 969 980 significant +R23 MODIFY Arg1:T50 Arg2:E25 +R24 MODIFY Arg1:T49 Arg2:E24 +T51 Sign_symptom 1031 1041 metastases +E26 Sign_symptom:T51 +T52 Biological_structure 1018 1030 subcutaneous +T53 Detailed_description 1042 1055 grew slightly +R25 MODIFY Arg1:T53 Arg2:E26 +R26 MODIFY Arg1:T52 Arg2:E26 +T54 Sign_symptom 1108 1131 symptomatic improvement +E27 Sign_symptom:T54 +T55 Sign_symptom 1156 1189 improvement in general appearance +E28 Sign_symptom:T55 +T56 Sign_symptom 1194 1201 dyspnea +E29 Sign_symptom:T56 +A1 TREND E29 DEC +T57 Sign_symptom 1228 1232 pain +E30 Sign_symptom:T57 +A2 TREND E30 DEC +T58 Biological_structure 1223 1227 bone +R27 MODIFY Arg1:T58 Arg2:E30 +T59 Therapeutic_procedure 1265 1287 oxygen supplementation +E31 Therapeutic_procedure:T59 +A3 POLARITY E31 NEG +T60 Sign_symptom 1306 1313 lesions +E32 Sign_symptom:T60 +T61 Biological_structure 1293 1305 subcutaneous +R28 MODIFY Arg1:T61 Arg2:E32 +A4 TREND E32 DEC +T62 Sign_symptom 1415 1422 lesions +E33 Sign_symptom:T62 +T63 Biological_structure 1410 1414 bone +R29 MODIFY Arg1:T63 Arg2:E33 +A5 TREND E33 DEC +T64 Date 1363 1379 by the 12th week +E34 Date:T64 +T65 Lab_value 1343 1362 complete resolution +R30 MODIFY Arg1:T65 Arg2:E32 +R31 MODIFY Arg1:E34 Arg2:T65 +T66 Medication 1465 1474 nivolumab +E35 Medication:T66 +T67 Date 1475 1490 until June 2015 +E36 Date:T67 +R32 BEFORE Arg1:E36 Arg2:E35 +T68 Sign_symptom 1576 1585 pneumonia +E37 Sign_symptom:T68 +T69 Detailed_description 1555 1575 bacterial aspiration +R33 MODIFY Arg1:T69 Arg2:E37 +T70 Outcome 1590 1601 passed away +E38 Outcome:T70 +T71 Date 1605 1614 June 2015 +E39 Date:T71 +R34 BEFORE Arg1:E39 Arg2:E38 +R35 BEFORE Arg1:E1 Arg2:E2 +* OVERLAP E2 E5 +R36 BEFORE Arg1:E5 Arg2:E6 +* OVERLAP E6 E7 E9 +R37 BEFORE Arg1:E9 Arg2:E10 +* OVERLAP E10 E11 +R38 BEFORE Arg1:E11 Arg2:E13 +* OVERLAP E13 E12 E14 E15 E16 E17 +R39 BEFORE Arg1:E17 Arg2:E18 +R40 BEFORE Arg1:E18 Arg2:E19 +* OVERLAP E19 E20 +R41 BEFORE Arg1:E20 Arg2:E21 +* OVERLAP E21 E22 E23 E24 E25 E26 +R42 BEFORE Arg1:E26 Arg2:E27 +* OVERLAP E27 E28 E29 E30 E31 +R43 BEFORE Arg1:E31 Arg2:E32 +* OVERLAP E32 E33 +R44 BEFORE Arg1:E33 Arg2:E35 +R45 BEFORE Arg1:E35 Arg2:E37 +R46 BEFORE Arg1:E37 Arg2:E38