--- a +++ b/processing/MACCROBAT/27904130.ann @@ -0,0 +1,287 @@ +T1 Sex 2 8 female +T3 Clinical_event 45 52 visited +E1 Clinical_event:T3 +T4 Nonbiological_location 57 65 hospital +R1 MODIFY Arg1:T4 Arg2:E1 +T5 Disease_disorder 77 92 liver cirrhosis +E2 Disease_disorder:T5 +T6 Disease_disorder 108 125 hepatitis B virus +E3 Disease_disorder:T6 +T7 Disease_disorder 130 149 biliary duct stones +E4 Disease_disorder:T7 +R2 CAUSE Arg1:E3 Arg2:E2 +R3 CAUSE Arg1:E4 Arg2:E2 +T2 History 77 92 liver cirrhosis +T8 Date 23 30 her 50s +E5 Date:T8 +#1 AnnotatorNotes E5 NOT patient's age in context of case report! +T9 Age 154 169 65 years of age +T10 Disease_disorder 189 192 HCC +E6 Disease_disorder:T10 +#2 AnnotatorNotes E6 Hepatocellular carcinoma +T11 Lab_value 198 216 BCLC early stage A +#3 AnnotatorNotes T11 Barcelona clinic liver cancer staging +R4 MODIFY Arg1:T11 Arg2:E6 +T12 Diagnostic_procedure 222 236 liver function +E7 Diagnostic_procedure:T12 +T13 Lab_value 241 255 well preserved +R5 MODIFY Arg1:T13 Arg2:E7 +T14 Diagnostic_procedure 261 277 Child-Pugh score +E8 Diagnostic_procedure:T14 +T15 Lab_value 282 283 A +R6 MODIFY Arg1:T15 Arg2:E8 +T16 Therapeutic_procedure 312 325 segmentectomy +E9 Therapeutic_procedure:T16 +T17 Detailed_description 299 311 left lateral +R7 MODIFY Arg1:T17 Arg2:E9 +T18 Disease_disorder 330 333 HCC +E10 Disease_disorder:T18 +T19 Therapeutic_procedure 343 372 other preoperative treatments +E11 Therapeutic_procedure:T19 +A1 POLARITY E11 NEG +T20 Diagnostic_procedure 374 400 Histopathological findings +E12 Diagnostic_procedure:T20 +T21 Disease_disorder 432 454 pseudolobule formation +E13 Disease_disorder:T21 +T22 Disease_disorder 419 427 fibrosis +E14 Disease_disorder:T22 +T23 Detailed_description 410 418 bridging +R8 MODIFY Arg1:T23 Arg2:E14 +T24 Diagnostic_procedure 472 489 alpha-fetoprotein +E15 Diagnostic_procedure:T24 +T25 Diagnostic_procedure 491 494 AFP +E16 Diagnostic_procedure:T25 +R9 IDENTICAL Arg1:E16 Arg2:E15 +T26 Biological_structure 456 461 Serum +R10 MODIFY Arg1:T26 Arg2:E15 +T27 Diagnostic_procedure 500 539 protein induced by vitamin K absence-II +E17 Diagnostic_procedure:T27 +T28 Lab_value 540 550 normalized +R11 MODIFY Arg1:T28 Arg2:E17 +R12 MODIFY Arg1:T28 Arg2:E15 +R13 MODIFY Arg1:T26 Arg2:E17 +T29 Coreference 565 574 resection +E18 Coreference:T29 +R14 IDENTICAL Arg1:E18 Arg2:E9 +T30 Sign_symptom 613 623 metastasis +E19 Sign_symptom:T30 +T31 Diagnostic_procedure 590 605 imaging studies +E20 Diagnostic_procedure:T31 +T32 Biological_structure 610 612 LN +#4 AnnotatorNotes T32 lymph node +R15 MODIFY Arg1:T32 Arg2:E19 +T33 Coreference 660 669 resection +E21 Coreference:T33 +R16 IDENTICAL Arg1:E21 Arg2:E18 +T34 Date 678 698 Two and a half years +E22 Date:T34 +T35 Diagnostic_procedure 730 739 AFP level +E23 Diagnostic_procedure:T35 +T36 Lab_value 740 762 increased dramatically +R17 MODIFY Arg1:T36 Arg2:E23 +T37 Lab_value 766 777 780.2 ng/ml +R18 MODIFY Arg1:T37 Arg2:E23 +T38 Sign_symptom 789 795 lesion +E24 Sign_symptom:T38 +T39 Shape 781 788 lobular +R19 MODIFY Arg1:T39 Arg2:E24 +T40 Diagnostic_procedure 852 878 magnetic resonance imaging +E25 Diagnostic_procedure:T40 +T41 Detailed_description 834 851 contrast-enhanced +R20 MODIFY Arg1:T41 Arg2:E25 +T42 Detailed_description 801 817 fine enhancement +R21 MODIFY Arg1:T42 Arg2:E24 +T43 Coreference 884 889 tumor +E26 Coreference:T43 +R22 IDENTICAL Arg1:E26 Arg2:E24 +T44 Distance 899 916 27 mm in diameter +R23 MODIFY Arg1:T44 Arg2:E26 +T45 Biological_structure 933 960 caudally on the left kidney +R24 MODIFY Arg1:T45 Arg2:E26 +T46 Diagnostic_procedure 983 1002 computed tomography +E27 Diagnostic_procedure:T46 +T47 Detailed_description 965 982 contrast-enhanced +R25 MODIFY Arg1:T47 Arg2:E27 +T48 Coreference 1008 1013 tumor +E28 Coreference:T48 +R26 IDENTICAL Arg1:E28 Arg2:E26 +T49 Sign_symptom 1028 1039 enhancement +E29 Sign_symptom:T49 +T50 Detailed_description 1021 1027 strong +R27 MODIFY Arg1:T50 Arg2:E29 +T51 Biological_structure 1047 1061 arterial phase +R28 MODIFY Arg1:T51 Arg2:E29 +T52 Sign_symptom 1099 1106 density +E30 Sign_symptom:T52 +T53 Detailed_description 1084 1098 relatively low +R29 MODIFY Arg1:T53 Arg2:E30 +T54 Biological_structure 1114 1126 portal phase +R30 MODIFY Arg1:T54 Arg2:E30 +T55 Disease_disorder 1206 1209 HCC +E31 Disease_disorder:T55 +T56 Detailed_description 1198 1205 typical +R31 MODIFY Arg1:T56 Arg2:E31 +T57 Diagnostic_procedure 1445 1470 Three-dimensional imaging +E32 Diagnostic_procedure:T57 +T58 Coreference 1487 1492 tumor +E33 Coreference:T58 +R32 IDENTICAL Arg1:E33 Arg2:E28 +T59 Biological_structure 1497 1553 fed by a main vessel from the inferior mesenteric artery +R33 MODIFY Arg1:T59 Arg2:E33 +T60 Biological_structure 1576 1628 accessory feeder from the superior mesenteric artery +R34 MODIFY Arg1:T60 Arg2:E33 +T61 Diagnostic_procedure 1641 1700 Fluorine-18-fluorodeoxyglucose positron emission tomography +E34 Diagnostic_procedure:T61 +T62 Diagnostic_procedure 1702 1709 FDG-PET +E35 Diagnostic_procedure:T62 +R35 IDENTICAL Arg1:E35 Arg2:E34 +T63 Diagnostic_procedure 1715 1763 positron emission tomography-computed tomography +E36 Diagnostic_procedure:T63 +T64 Sign_symptom 1991 2001 metastasis +E37 Sign_symptom:T64 +A2 POLARITY E37 NEG +T65 Biological_structure 1978 1990 extrahepatic +T66 Biological_structure 1962 1974 intrahepatic +R36 MODIFY Arg1:T65 Arg2:E37 +R37 MODIFY Arg1:T66 Arg2:E37 +T67 Sign_symptom 2068 2078 metastasis +E38 Sign_symptom:T67 +T68 Detailed_description 2059 2067 solitary +R38 MODIFY Arg1:T68 Arg2:E38 +T69 Biological_structure 2084 2096 mesocolic LN +R39 MODIFY Arg1:T69 Arg2:E38 +T70 Disease_disorder 2100 2103 HCC +E39 Disease_disorder:T70 +T71 Detailed_description 2104 2117 dissemination +R40 MODIFY Arg1:T71 Arg2:E39 +T72 Sign_symptom 2286 2291 tumor +E40 Sign_symptom:T72 +T73 Detailed_description 2296 2304 solitary +R41 MODIFY Arg1:T73 Arg2:E40 +T74 Sign_symptom 2334 2344 metastases +E41 Sign_symptom:T74 +A3 POLARITY E41 NEG +T75 Detailed_description 2328 2333 other +R42 MODIFY Arg1:T75 Arg2:E41 +T76 Therapeutic_procedure 2419 2437 surgical resection +E42 Therapeutic_procedure:T76 +T77 Sign_symptom 2455 2476 disseminative nodules +E43 Sign_symptom:T77 +A4 POLARITY E43 NEG +T78 Disease_disorder 2478 2493 lymphadenopathy +E44 Disease_disorder:T78 +A5 POLARITY E44 NEG +T79 Sign_symptom 2498 2505 ascites +E45 Sign_symptom:T79 +A6 POLARITY E45 NEG +T80 Coreference 2539 2544 tumor +E46 Coreference:T80 +R43 IDENTICAL Arg1:E46 Arg2:E40 +T81 Biological_structure 2564 2573 mesocolon +R44 MODIFY Arg1:T81 Arg2:E46 +T82 Biological_structure 2581 2616 at the wall of the descending colon +R45 MODIFY Arg1:T82 Arg2:E46 +T83 Coreference 2630 2639 resection +E47 Coreference:T83 +R46 IDENTICAL Arg1:E47 Arg2:E42 +T84 Biological_structure 2647 2663 descending colon +R47 MODIFY Arg1:T84 Arg2:E47 +T85 Biological_structure 2669 2687 regional mesocolon +R48 MODIFY Arg1:T85 Arg2:E47 +T86 Therapeutic_procedure 2717 2737 postoperative course +E48 Therapeutic_procedure:T86 +T87 Lab_value 2742 2752 uneventful +R49 MODIFY Arg1:T87 Arg2:E48 +T88 Clinical_event 2766 2776 discharged +E49 Clinical_event:T88 +T89 Date 2794 2799 day 8 +E50 Date:T89 +T90 Diagnostic_procedure 2817 2829 tumor marker +E51 Diagnostic_procedure:T90 +T91 Biological_structure 2801 2806 Serum +R50 MODIFY Arg1:T91 Arg2:E51 +T92 Lab_value 2830 2851 decreased immediately +R51 MODIFY Arg1:T92 Arg2:E51 +T93 Diagnostic_procedure 2878 2893 Macroscopically +E52 Diagnostic_procedure:T93 +T94 Coreference 2899 2914 mesocolic tumor +E53 Coreference:T94 +R52 IDENTICAL Arg1:E53 Arg2:E46 +T95 Lab_value 2921 2926 solid +T96 Lab_value 2931 2938 elastic +T97 Texture 2951 2965 smooth surface +R53 MODIFY Arg1:T95 Arg2:E53 +R54 MODIFY Arg1:T96 Arg2:E53 +R55 MODIFY Arg1:T97 Arg2:E53 +T98 Sign_symptom 2991 2997 nodule +E54 Sign_symptom:T98 +T99 Color 2981 2990 yellowish +R56 MODIFY Arg1:T99 Arg2:E54 +T100 Detailed_description 3002 3033 encapsulated in the cut surface +R57 MODIFY Arg1:T100 Arg2:E54 +T101 Disease_disorder 3084 3087 HCC +E55 Disease_disorder:T101 +T102 Detailed_description 3095 3111 ductal structure +R58 MODIFY Arg1:T102 Arg2:E55 +T103 Detailed_description 3073 3083 metastatic +R59 MODIFY Arg1:T103 Arg2:E55 +T104 Detailed_description 3051 3062 enlarged LN +R60 MODIFY Arg1:T104 Arg2:E55 +T105 Diagnostic_procedure 3129 3150 immunohistochemically +E56 Diagnostic_procedure:T105 +T106 Diagnostic_procedure 3179 3182 AFP +E57 Diagnostic_procedure:T106 +T107 Lab_value 3166 3174 positive +R61 MODIFY Arg1:T107 Arg2:E57 +T108 Diagnostic_procedure 3200 3205 CK-20 +E58 Diagnostic_procedure:T108 +T109 Lab_value 3187 3195 negative +R62 MODIFY Arg1:T109 Arg2:E58 +T110 Disease_disorder 3256 3259 HCC +E59 Disease_disorder:T110 +T111 Detailed_description 3248 3255 primary +R63 MODIFY Arg1:T111 Arg2:E59 +R64 SUB_PROCEDURE Arg1:E58 Arg2:E56 +R65 SUB_PROCEDURE Arg1:E57 Arg2:E56 +T112 Disease_disorder 3320 3323 HCC +E60 Disease_disorder:T112 +T113 Detailed_description 3309 3319 metastatic +R66 MODIFY Arg1:T113 Arg2:E60 +T114 Biological_structure 3329 3341 mesocolic LN +R67 MODIFY Arg1:T114 Arg2:E60 +T115 Sign_symptom 3410 3420 recurrence +E61 Sign_symptom:T115 +A7 POLARITY E61 NEG +T116 Date 3425 3440 13 months after +E62 Date:T116 +T117 Clinical_event 3489 3500 followed up +E63 Clinical_event:T117 +T118 Medication 3505 3523 adjuvant therapies +E64 Medication:T118 +A8 POLARITY E64 NEG +* OVERLAP E1 E2 E3 E4 +R68 BEFORE Arg1:E4 Arg2:E6 +* OVERLAP E6 E7 E8 +R69 BEFORE Arg1:E8 Arg2:E9 +* OVERLAP E9 E10 E11 E12 E14 E13 +R70 BEFORE Arg1:E13 Arg2:E15 +* OVERLAP E15 E17 E18 E20 E19 E21 +R71 BEFORE Arg1:E21 Arg2:E22 +* OVERLAP E22 E23 E24 E25 E26 E27 E28 E29 E30 E31 E32 E33 E34 E36 E37 E38 E39 E40 E41 +R72 BEFORE Arg1:E41 Arg2:E42 +* OVERLAP E42 E43 E44 E45 E65 E46 E47 +T119 Coreference 2526 2533 surgery +E65 Coreference:T119 +R73 IDENTICAL Arg1:E65 Arg2:E42 +R74 BEFORE Arg1:E47 Arg2:E48 +R75 BEFORE Arg1:E48 Arg2:E49 +* OVERLAP E49 E50 +R76 AFTER Arg1:E50 Arg2:E51 +T120 Coreference 2858 2865 surgery +E66 Coreference:T120 +R77 IDENTICAL Arg1:E66 Arg2:E65 +* OVERLAP E51 E52 E53 E54 E55 E56 E59 E60 +R78 BEFORE Arg1:E60 Arg2:E61 +* OVERLAP E61 E62 E63 E64 +T121 History 108 125 hepatitis B virus +T122 History 130 149 biliary duct stones