--- a +++ b/processing/MACCROBAT/27842595.ann @@ -0,0 +1,307 @@ +T1 Age 2 13 47-year-old +T2 Sex 14 19 woman +T3 Clinical_event 20 29 presented +E1 Clinical_event:T3 +T4 Nonbiological_location 37 45 hospital +R1 MODIFY Arg1:T4 Arg2:E1 +T5 Duration 53 60 1-month +E2 Duration:T5 +T6 Sign_symptom 82 92 distention +E3 Sign_symptom:T6 +T7 Biological_structure 72 81 abdominal +R2 MODIFY Arg1:T7 Arg2:E3 +T8 Diagnostic_procedure 94 114 Physical examination +E4 Diagnostic_procedure:T8 +T9 Sign_symptom 131 135 mass +E5 Sign_symptom:T9 +T10 Severity 126 130 huge +R3 MODIFY Arg1:T10 Arg2:E5 +T11 Biological_structure 143 156 lower abdomen +R4 MODIFY Arg1:T11 Arg2:E5 +T12 Diagnostic_procedure 162 183 peripheral blood test +E6 Diagnostic_procedure:T12 +T13 Diagnostic_procedure 210 234 carcinoembryonic antigen +E7 Diagnostic_procedure:T13 +T14 Lab_value 191 199 elevated +R5 MODIFY Arg1:T14 Arg2:E7 +T15 Diagnostic_procedure 236 239 CEA +E8 Diagnostic_procedure:T15 +R6 IDENTICAL Arg1:E8 Arg2:E7 +T16 Lab_value 241 252 335.2 ng/mL +R7 MODIFY Arg1:T16 Arg2:E7 +T17 Diagnostic_procedure 277 297 carbohydrate antigen +E9 Diagnostic_procedure:T17 +T18 Diagnostic_procedure 299 301 CA +E10 Diagnostic_procedure:T18 +R8 IDENTICAL Arg1:E10 Arg2:E9 +T19 Detailed_description 303 306 125 +R9 MODIFY Arg1:T19 Arg2:E9 +T20 Lab_value 308 316 219 U/mL +R10 MODIFY Arg1:T20 Arg2:E9 +R11 MODIFY Arg1:T14 Arg2:E9 +T21 Diagnostic_procedure 359 365 CA19-9 +E11 Diagnostic_procedure:T21 +R12 SUB_PROCEDURE Arg1:E7 Arg2:E6 +R13 SUB_PROCEDURE Arg1:E9 Arg2:E6 +R14 SUB_PROCEDURE Arg1:E11 Arg2:E6 +T22 Lab_value 367 373 9 U/mL +R15 MODIFY Arg1:T22 Arg2:E11 +T23 Lab_value 343 349 normal +R16 MODIFY Arg1:T23 Arg2:E11 +T24 Diagnostic_procedure 395 414 Computed tomography +E12 Diagnostic_procedure:T24 +T25 Diagnostic_procedure 416 418 CT +E13 Diagnostic_procedure:T25 +R17 IDENTICAL Arg1:E13 Arg2:E12 +T26 Sign_symptom 448 452 mass +E14 Sign_symptom:T26 +T27 Shape 442 447 round +T28 Severity 435 440 large +R18 MODIFY Arg1:T27 Arg2:E14 +R19 MODIFY Arg1:T28 Arg2:E14 +T29 Distance 480 485 15 cm +R20 MODIFY Arg1:T29 Arg2:E14 +T30 Biological_structure 493 506 pelvic cavity +R21 MODIFY Arg1:T30 Arg2:E14 +T31 Sign_symptom 531 538 ascites +E15 Sign_symptom:T31 +A1 POLARITY E15 NEG +T32 Sign_symptom 542 558 pleural effusion +E16 Sign_symptom:T32 +A2 POLARITY E16 NEG +T33 Diagnostic_procedure 573 584 Colonoscopy +E17 Diagnostic_procedure:T33 +T34 Sign_symptom 608 614 lesion +E18 Sign_symptom:T34 +T35 Lab_value 599 607 elevated +R22 MODIFY Arg1:T35 Arg2:E18 +T36 Sign_symptom 627 635 stenosis +E19 Sign_symptom:T36 +T37 Severity 620 626 severe +R23 MODIFY Arg1:T37 Arg2:E19 +T38 Biological_structure 643 656 sigmoid colon +R24 MODIFY Arg1:T38 Arg2:E19 +T39 Diagnostic_procedure 662 691 histopathological examination +E20 Diagnostic_procedure:T39 +T40 Diagnostic_procedure 695 711 biopsy specimens +E21 Diagnostic_procedure:T40 +T41 Coreference 721 726 tumor +E22 Coreference:T41 +R25 IDENTICAL Arg1:E22 Arg2:E18 +R26 MODIFY Arg1:E22 Arg2:E21 +R27 SUB_PROCEDURE Arg1:E21 Arg2:E20 +T42 Disease_disorder 760 774 adenocarcinoma +E23 Disease_disorder:T42 +T43 Lab_value 734 759 moderately differentiated +R28 MODIFY Arg1:T43 Arg2:E23 +T44 Therapeutic_procedure 807 816 operation +E24 Therapeutic_procedure:T44 +A3 POLARITY E24 NEG +T45 Sign_symptom 846 853 dyspnea +E25 Sign_symptom:T45 +T46 Lab_value 840 845 acute +R29 MODIFY Arg1:T46 Arg2:E25 +T47 Sign_symptom 866 871 edema +E26 Sign_symptom:T47 +T48 Lab_value 858 865 general +R30 MODIFY Arg1:T48 Arg2:E26 +T49 Date 872 885 2 weeks after +E27 Date:T49 +T50 Diagnostic_procedure 916 918 CT +E28 Diagnostic_procedure:T50 +T51 Sign_symptom 967 983 pleural effusion +E29 Sign_symptom:T51 +T52 Detailed_description 957 966 bilateral +R31 MODIFY Arg1:T52 Arg2:E29 +T53 Severity 949 956 massive +R32 MODIFY Arg1:T53 Arg2:E29 +T54 Sign_symptom 989 1000 atelectasis +E30 Sign_symptom:T54 +T55 Sign_symptom 1005 1012 ascites +E31 Sign_symptom:T55 +T56 Therapeutic_procedure 1026 1043 Thoracic drainage +E32 Therapeutic_procedure:T56 +T57 Therapeutic_procedure 1048 1058 laparotomy +E33 Therapeutic_procedure:T57 +T58 Diagnostic_procedure 1086 1101 Macroscopically +E34 Diagnostic_procedure:T58 +T59 Coreference 1107 1112 tumor +E35 Coreference:T59 +R33 IDENTICAL Arg1:E35 Arg2:E22 +T60 Biological_structure 1120 1133 sigmoid colon +R34 MODIFY Arg1:T60 Arg2:E35 +T61 Sign_symptom 1138 1145 invaded +E36 Sign_symptom:T61 +R35 MODIFY Arg1:E35 Arg2:E36 +T62 Biological_structure 1150 1156 serosa +R36 MODIFY Arg1:T62 Arg2:E36 +T63 Sign_symptom 1178 1182 mass +E37 Sign_symptom:T63 +T64 Biological_structure 1171 1177 pelvic +T65 Severity 1166 1170 huge +R37 MODIFY Arg1:T65 Arg2:E37 +R38 MODIFY Arg1:T64 Arg2:E37 +T66 Disease_disorder 1212 1225 ovarian tumor +E38 Disease_disorder:T66 +T67 Detailed_description 1206 1211 right +R39 MODIFY Arg1:T67 Arg2:E38 +R40 CAUSE Arg1:E37 Arg2:E38 +T68 Sign_symptom 1241 1248 nodules +E39 Sign_symptom:T68 +T69 Biological_structure 1252 1262 peritoneal +T70 Sign_symptom 1263 1276 dissemination +E40 Sign_symptom:T70 +R41 MODIFY Arg1:T69 Arg2:E40 +T71 Biological_structure 1303 1318 greater omentum +R42 MODIFY Arg1:T71 Arg2:E40 +T72 Volume 1337 1344 3800 mL +T73 Sign_symptom 1355 1368 ascitic fluid +E41 Sign_symptom:T73 +T74 Lab_value 1348 1354 serous +R43 MODIFY Arg1:T74 Arg2:E41 +R44 MODIFY Arg1:T72 Arg2:E41 +T75 Therapeutic_procedure 1373 1380 drained +E42 Therapeutic_procedure:T75 +R45 MODIFY Arg1:E41 Arg2:E42 +T76 Diagnostic_procedure 1382 1395 Cytodiagnosis +E43 Diagnostic_procedure:T76 +T77 Sign_symptom 1403 1408 fluid +E44 Sign_symptom:T77 +T78 Sign_symptom 1426 1433 ascites +E45 Sign_symptom:T78 +T79 Sign_symptom 1438 1454 pleural effusion +E46 Sign_symptom:T79 +T80 Diagnostic_procedure 1467 1478 tumor cells +E47 Diagnostic_procedure:T80 +T81 Lab_value 1464 1466 no +R46 MODIFY Arg1:T81 Arg2:E47 +R47 SUB_PROCEDURE Arg1:E47 Arg2:E43 +R48 MODIFY Arg1:E44 Arg2:E43 +R49 MODIFY Arg1:E45 Arg2:E44 +R50 MODIFY Arg1:E46 Arg2:E44 +T82 Therapeutic_procedure 1490 1502 oophorectomy +E48 Therapeutic_procedure:T82 +T83 Therapeutic_procedure 1510 1522 hysterectomy +E49 Therapeutic_procedure:T83 +T84 Detailed_description 1504 1509 total +R51 MODIFY Arg1:T84 Arg2:E49 +T85 Detailed_description 1480 1489 Bilateral +R52 MODIFY Arg1:T85 Arg2:E48 +T86 Therapeutic_procedure 1524 1535 omentectomy +E50 Therapeutic_procedure:T86 +T87 Therapeutic_procedure 1541 1554 sigmoidectomy +E51 Therapeutic_procedure:T87 +T88 Therapeutic_procedure 1569 1584 node dissection +E52 Therapeutic_procedure:T88 +T89 Detailed_description 1560 1568 regional +R53 MODIFY Arg1:T89 Arg2:E52 +T90 Diagnostic_procedure 1610 1639 Histopathological examination +E53 Diagnostic_procedure:T90 +T91 Disease_disorder 1699 1713 adenocarcinoma +E54 Disease_disorder:T91 +T92 Sign_symptom 1721 1727 tumors +E55 Sign_symptom:T92 +T93 Biological_structure 1740 1747 ovaries +T94 Biological_structure 1756 1769 sigmoid colon +R54 MODIFY Arg1:T94 Arg2:E55 +R55 MODIFY Arg1:T93 Arg2:E55 +R56 MODIFY Arg1:E55 Arg2:E54 +T95 Lab_value 1673 1698 moderately differentiated +R57 MODIFY Arg1:T95 Arg2:E54 +T96 Sign_symptom 1817 1832 malignant cells +E56 Sign_symptom:T96 +T97 Biological_structure 1794 1809 paracolic nodes +R58 MODIFY Arg1:T97 Arg2:E56 +T98 Diagnostic_procedure 1834 1855 Immunohistochemically +E57 Diagnostic_procedure:T98 +T99 Sign_symptom 1857 1868 tumor cells +E58 Sign_symptom:T99 +T100 Biological_structure 1878 1885 ovaries +T101 Biological_structure 1894 1899 colon +R59 MODIFY Arg1:T100 Arg2:E58 +R60 MODIFY Arg1:T101 Arg2:E58 +T102 Diagnostic_procedure 1935 1949 cytokeratin 20 +E59 Diagnostic_procedure:T102 +R61 SUB_PROCEDURE Arg1:E59 Arg2:E57 +T103 Diagnostic_procedure 1951 1955 CK20 +E60 Diagnostic_procedure:T103 +R62 IDENTICAL Arg1:E60 Arg2:E59 +T104 Diagnostic_procedure 1978 1991 cytokeratin 7 +E61 Diagnostic_procedure:T104 +T105 Diagnostic_procedure 1993 1996 CK7 +E62 Diagnostic_procedure:T105 +R63 IDENTICAL Arg1:E62 Arg2:E61 +R64 SUB_PROCEDURE Arg1:E61 Arg2:E57 +T106 Lab_value 1961 1974 no expression +R65 MODIFY Arg1:T106 Arg2:E61 +T107 Lab_value 1912 1931 positive expression +R66 MODIFY Arg1:T107 Arg2:E59 +T108 Disease_disorder 2055 2075 primary colon cancer +E63 Disease_disorder:T108 +T109 Disease_disorder 2019 2033 ovarian tumors +E64 Disease_disorder:T109 +T110 Sign_symptom 2039 2049 metastases +E65 Sign_symptom:T110 +R67 CAUSE Arg1:E63 Arg2:E65 +R68 CAUSE Arg1:E65 Arg2:E64 +T111 Diagnostic_procedure 2094 2114 postoperative course +E66 Diagnostic_procedure:T111 +T112 Lab_value 2119 2129 uneventful +R69 MODIFY Arg1:T112 Arg2:E66 +T113 Sign_symptom 2140 2156 pleural effusion +E67 Sign_symptom:T113 +A4 POLARITY E67 NEG +T114 Sign_symptom 2161 2168 ascites +E68 Sign_symptom:T114 +A5 POLARITY E68 NEG +T115 Medication 2217 2231 5-fluorouracil +E69 Medication:T115 +T116 Medication 2233 2237 5-FU +E70 Medication:T116 +T117 Medication 2240 2250 leucovorin +E71 Medication:T117 +T118 Medication 2256 2267 oxaliplatin +E72 Medication:T118 +T119 Medication 2269 2275 FOLFOX +E73 Medication:T119 +R70 IDENTICAL Arg1:E70 Arg2:E69 +R71 SUB_PROCEDURE Arg1:E72 Arg2:E73 +R72 SUB_PROCEDURE Arg1:E71 Arg2:E73 +R73 SUB_PROCEDURE Arg1:E69 Arg2:E73 +T120 Frequency 2294 2320 every 2 weeks for 5 months +R74 MODIFY Arg1:T120 Arg2:E73 +T121 Date 2325 2340 29 months after +E74 Date:T121 +T122 Date 2435 2450 78 months after +E75 Date:T122 +T123 Therapeutic_procedure 2400 2409 resection +E76 Therapeutic_procedure:T123 +T124 Biological_structure 2392 2399 hepatic +R75 MODIFY Arg1:T124 Arg2:E76 +T125 Sign_symptom 2420 2430 metastases +E77 Sign_symptom:T125 +T126 Biological_structure 2414 2419 liver +R76 MODIFY Arg1:T126 Arg2:E77 +T127 Sign_symptom 2492 2497 alive +E78 Sign_symptom:T127 +T128 Disease_disorder 2520 2527 disease +E79 Disease_disorder:T128 +A6 POLARITY E79 NEG +R77 AFTER Arg1:E1 Arg2:E2 +* OVERLAP E2 E3 +R78 BEFORE Arg1:E3 Arg2:E4 +* OVERLAP E4 E5 E6 E12 E14 E15 E16 E17 E18 E19 E20 E23 +R79 BEFORE Arg1:E23 Arg2:E24 +* OVERLAP E24 E25 E26 E27 +R80 BEFORE Arg1:E27 Arg2:E28 +* OVERLAP E28 E29 E30 E31 +R81 BEFORE Arg1:E31 Arg2:E32 +* OVERLAP E32 E33 E34 E35 E36 E37 E38 E39 E40 E41 E43 E44 E45 E46 E47 +R82 BEFORE Arg1:E47 Arg2:E48 +* OVERLAP E48 E49 E50 E51 E52 E53 E54 E55 E56 E57 E58 E64 E65 E63 +R83 BEFORE Arg1:E63 Arg2:E66 +* OVERLAP E66 E67 E68 E73 +R84 BEFORE Arg1:E73 Arg2:E74 +* OVERLAP E74 E76 E77 +R85 BEFORE Arg1:E77 Arg2:E75 +* OVERLAP E75 E78 E79