--- a +++ b/processing/MACCROBAT/26445413.ann @@ -0,0 +1,222 @@ +T1 Age 2 13 33-year-old +T2 Sex 14 17 man +T3 Sign_symptom 49 53 ache +E1 Sign_symptom:T3 +T4 Detailed_description 44 48 dull +R1 MODIFY Arg1:T4 Arg2:E1 +T5 Biological_structure 33 43 left flank +R2 MODIFY Arg1:T5 Arg2:E1 +T6 Diagnostic_procedure 72 91 computed tomography +E2 Diagnostic_procedure:T6 +T7 Biological_structure 62 71 abdominal +R3 MODIFY Arg1:T7 Arg2:E2 +T8 Sign_symptom 107 111 mass +E3 Sign_symptom:T8 +T9 Biological_structure 101 106 renal +T10 Detailed_description 95 100 solid +R4 MODIFY Arg1:T9 Arg2:E3 +R5 MODIFY Arg1:T10 Arg2:E3 +T11 Biological_structure 119 151 upper portion of the left kidney +R6 MODIFY Arg1:T11 Arg2:E3 +T12 Coreference 172 176 mass +E4 Coreference:T12 +R7 IDENTICAL Arg1:E4 Arg2:E3 +T13 Volume 190 214 2.8 cm × 2.8 cm × 2.5 cm +R8 MODIFY Arg1:T13 Arg2:E4 +T14 Detailed_description 228 240 well-defined +R9 MODIFY Arg1:T14 Arg2:E4 +T15 Sign_symptom 261 284 other abnormal findings +E5 Sign_symptom:T15 +A1 POLARITY E5 NEG +T16 Sign_symptom 312 322 metastasis +E6 Sign_symptom:T16 +A2 POLARITY E6 NEG +T17 Detailed_description 304 311 distant +R10 MODIFY Arg1:T17 Arg2:E6 +T18 Sign_symptom 337 347 metastasis +E7 Sign_symptom:T18 +A3 POLARITY E7 NEG +T19 Biological_structure 326 336 lymph node +R11 MODIFY Arg1:T19 Arg2:E7 +T20 Therapeutic_procedure 357 368 nephrectomy +E8 Therapeutic_procedure:T20 +T21 Detailed_description 349 356 Radical +R12 MODIFY Arg1:T21 Arg2:E8 +T22 Date 386 395 14/9/2005 +E9 Date:T22 +T23 Diagnostic_procedure 400 417 gross examination +E10 Diagnostic_procedure:T23 +T24 Detailed_description 423 443 nephrectomy specimen +T25 Volume 453 478 11.5 cm × 6.5 cm × 4.5 cm +R13 MODIFY Arg1:T25 Arg2:T24 +R14 MODIFY Arg1:T24 Arg2:E10 +T26 Coreference 487 492 tumor +E11 Coreference:T26 +R15 IDENTICAL Arg1:E11 Arg2:E4 +T27 Color 506 519 grayish-brown +T28 Coreference 520 524 mass +E12 Coreference:T28 +R16 IDENTICAL Arg1:E12 Arg2:E11 +T29 Detailed_description 499 504 solid +R17 MODIFY Arg1:T29 Arg2:E12 +R18 MODIFY Arg1:T27 Arg2:E12 +T30 Volume 534 558 3.5 cm × 2.5 cm × 2.2 cm +R19 MODIFY Arg1:T30 Arg2:E12 +T31 Diagnostic_procedure 568 590 Histologic examination +E13 Diagnostic_procedure:T31 +T37 Diagnostic_procedure 673 682 cytoplasm +E16 Diagnostic_procedure:T37 +R23 SUB_PROCEDURE Arg1:E16 Arg2:E13 +T32 Lab_value 604 638 trabecular and ribbonlike patterns +T33 Lab_value 644 667 minimal fibrotic stroma +R20 MODIFY Arg1:T32 Arg2:E13 +R21 MODIFY Arg1:T33 Arg2:E13 +T34 Lab_value 687 695 granular +T35 Lab_value 700 712 eosinophilic +R22 MODIFY Arg1:T34 Arg2:E16 +R24 MODIFY Arg1:T35 Arg2:E16 +T36 Lab_value 718 746 uniform round to oval nuclei +R25 MODIFY Arg1:T36 Arg2:E16 +T38 Lab_value 752 777 finely stippled chromatin +T39 Lab_value 782 804 inconspicuous nucleoli +R26 MODIFY Arg1:T38 Arg2:E16 +R27 MODIFY Arg1:T39 Arg2:E16 +T40 Diagnostic_procedure 861 870 H&E stain +E14 Diagnostic_procedure:T40 +T41 Lab_value 819 828 not found +T42 Lab_value 830 856 0 per 10 high-power fields +T43 Diagnostic_procedure 882 904 pathologic examination +E15 Diagnostic_procedure:T43 +T44 Disease_disorder 936 968 neuroendocrine (carcinoid) tumor +E17 Disease_disorder:T44 +T45 Detailed_description 916 935 well-differentiated +R30 MODIFY Arg1:T45 Arg2:E17 +T46 Biological_structure 985 991 kidney +R31 MODIFY Arg1:T46 Arg2:E17 +T47 Diagnostic_procedure 1001 1027 Immunohistochemical stains +E18 Diagnostic_procedure:T47 +T48 Diagnostic_procedure 1055 1067 chromogranin +E19 Diagnostic_procedure:T48 +T49 Diagnostic_procedure 1069 1092 neuron-specific enolase +E20 Diagnostic_procedure:T49 +T50 Diagnostic_procedure 1097 1110 synaptophysin +E21 Diagnostic_procedure:T50 +T51 Lab_value 1041 1049 labeling +R32 MODIFY Arg1:T51 Arg2:E19 +R33 MODIFY Arg1:T51 Arg2:E20 +R34 MODIFY Arg1:T51 Arg2:E21 +R35 SUB_PROCEDURE Arg1:E19 Arg2:E18 +R36 SUB_PROCEDURE Arg1:E20 Arg2:E18 +R37 SUB_PROCEDURE Arg1:E21 Arg2:E18 +T52 Diagnostic_procedure 1128 1147 proliferation index +E22 Diagnostic_procedure:T52 +T53 Lab_value 1152 1165 less than 2 % +R38 MODIFY Arg1:T53 Arg2:E22 +T54 Diagnostic_procedure 1181 1211 immunohistochemistry for Ki-67 +E23 Diagnostic_procedure:T54 +R39 SUB_PROCEDURE Arg1:E23 Arg2:E22 +T55 Therapeutic_procedure 1221 1230 radiation +E24 Therapeutic_procedure:T55 +A4 POLARITY E24 NEG +T56 Medication 1235 1247 chemotherapy +E25 Medication:T56 +A5 POLARITY E25 NEG +T57 Date 1267 1283 Nine years after +E26 Date:T57 +T58 Diagnostic_procedure 1305 1324 computed tomography +E27 Diagnostic_procedure:T58 +T59 Biological_structure 1332 1339 abdomen +R40 MODIFY Arg1:T59 Arg2:E27 +T60 Sign_symptom 1374 1378 mass +E28 Sign_symptom:T60 +T61 Detailed_description 1369 1373 cyst +T62 Area 1355 1368 2 cm × 1.8 cm +R41 MODIFY Arg1:T62 Arg2:E28 +R42 MODIFY Arg1:T61 Arg2:E28 +T63 Biological_structure 1386 1397 right liver +R43 MODIFY Arg1:T63 Arg2:E28 +T64 Sign_symptom 1411 1430 high density shadow +E29 Sign_symptom:T64 +T65 Detailed_description 1402 1410 multiple +R44 MODIFY Arg1:T65 Arg2:E29 +T66 Biological_structure 1434 1445 gallbladder +R45 MODIFY Arg1:T66 Arg2:E29 +T67 Sign_symptom 1450 1458 enlarged +E30 Sign_symptom:T67 +T68 Biological_structure 1459 1470 lymph nodes +R46 MODIFY Arg1:T68 Arg2:E30 +A6 POLARITY E30 NEG +T69 Biological_structure 1489 1505 abdominal cavity +R47 MODIFY Arg1:T69 Arg2:E30 +T70 Therapeutic_procedure 1507 1522 Cholecystectomy +E31 Therapeutic_procedure:T70 +T71 Therapeutic_procedure 1527 1538 extirpation +E32 Therapeutic_procedure:T71 +T72 Disease_disorder 1543 1555 hepatic cyst +E33 Disease_disorder:T72 +T73 Therapeutic_procedure 1574 1593 laparoscopy surgery +E34 Therapeutic_procedure:T73 +R48 SUB_PROCEDURE Arg1:E34 Arg2:E32 +R49 SUB_PROCEDURE Arg1:E34 Arg2:E31 +T74 Diagnostic_procedure 1595 1617 Histologic examination +E35 Diagnostic_procedure:T74 +T75 Lab_value 1631 1662 trabecular and glandlike growth +R50 MODIFY Arg1:T75 Arg2:E35 +T76 Lab_value 1672 1699 moderate and uniform nuclei +R51 MODIFY Arg1:T76 Arg2:E35 +T78 Diagnostic_procedure 806 813 Mitoses +E36 Diagnostic_procedure:T78 +R28 SUB_PROCEDURE Arg1:E36 Arg2:E14 +R29 MODIFY Arg1:T41 Arg2:E36 +R52 MODIFY Arg1:T42 Arg2:E36 +T77 Diagnostic_procedure 1704 1711 mitoses +E37 Diagnostic_procedure:T77 +T79 Lab_value 1712 1725 weren't found +R53 MODIFY Arg1:T79 Arg2:E37 +T80 Lab_value 1727 1753 0 per 10 high-power fields +R54 MODIFY Arg1:T80 Arg2:E37 +T81 Diagnostic_procedure 1765 1785 immunohistochemistry +E38 Diagnostic_procedure:T81 +T82 Detailed_description 1756 1764 Advanced +R55 MODIFY Arg1:T82 Arg2:E38 +T83 Coreference 1804 1810 lesion +E39 Coreference:T83 +#1 AnnotatorNotes E39 Not actually sure which of two lesions this refers to +R56 IDENTICAL Arg1:E39 Arg2:E33 +T84 Lab_value 1815 1823 positive +T85 Diagnostic_procedure 1828 1841 synaptophysin +E40 Diagnostic_procedure:T85 +T86 Diagnostic_procedure 1877 1889 chromogranin +E41 Diagnostic_procedure:T86 +T87 Diagnostic_procedure 1894 1917 neuron-specific enolase +E42 Diagnostic_procedure:T87 +T88 Lab_value 1864 1872 negative +R57 MODIFY Arg1:T84 Arg2:E40 +R58 SUB_PROCEDURE Arg1:E40 Arg2:E38 +R59 SUB_PROCEDURE Arg1:E41 Arg2:E38 +R60 SUB_PROCEDURE Arg1:E42 Arg2:E38 +R61 MODIFY Arg1:T88 Arg2:E41 +R62 MODIFY Arg1:T88 Arg2:E42 +T89 Disease_disorder 1953 1973 neuroendocrine tumor +E43 Disease_disorder:T89 +T90 Disease_disorder 2119 2134 carcinoid tumor +E44 Disease_disorder:T90 +T91 Biological_structure 2142 2153 left kidney +R63 MODIFY Arg1:T91 Arg2:E44 +T92 Sign_symptom 2165 2175 metastasis +E45 Sign_symptom:T92 +T93 Biological_structure 2159 2164 liver +R64 MODIFY Arg1:T93 Arg2:E45 +T94 Clinical_event 18 27 presented +E46 Clinical_event:T94 +* OVERLAP E46 E1 E2 E3 E5 E6 E7 +R65 BEFORE Arg1:E7 Arg2:E8 +* OVERLAP E8 E10 E13 E14 +R66 BEFORE Arg1:E14 Arg2:E15 +* OVERLAP E15 E17 E18 E22 +R67 BEFORE Arg1:E22 Arg2:E24 +* OVERLAP E24 E25 +R68 BEFORE Arg1:E25 Arg2:E26 +* OVERLAP E26 E27 E28 E29 E30 E31 E32 E33 E35 E37 E38 E43 +R69 BEFORE Arg1:E43 Arg2:E44 +* OVERLAP E44 E45