--- a +++ b/processing/MACCROBAT/26361431.ann @@ -0,0 +1,271 @@ +T1 Age 2 13 60-year-old +T2 Sex 14 18 male +T3 History 85 93 diabetes +T4 History 98 117 alcoholic hepatitis +T5 Disease_disorder 98 117 alcoholic hepatitis +E1 Disease_disorder:T5 +T6 Disease_disorder 85 93 diabetes +E2 Disease_disorder:T6 +T7 Diagnostic_procedure 122 142 physical examination +E3 Diagnostic_procedure:T7 +T8 Activity 19 26 visited +E4 Activity:T8 +T9 Nonbiological_location 31 48 outpatient clinic +R1 MODIFY Arg1:T9 Arg2:E4 +T10 Sign_symptom 56 60 mass +E5 Sign_symptom:T10 +T11 Biological_structure 68 76 left hip +R2 MODIFY Arg1:T11 Arg2:E5 +T12 Sign_symptom 152 156 mass +E6 Sign_symptom:T12 +T13 Medication 2435 2447 chemotherapy +E7 Medication:T13 +T14 Medication 2457 2466 etoposide +E8 Medication:T14 +T15 Medication 2471 2480 cisplatin +E9 Medication:T15 +R3 SUB_PROCEDURE Arg1:E8 Arg2:E7 +R4 SUB_PROCEDURE Arg1:E9 Arg2:E7 +T16 Distance 167 172 10 cm +R5 MODIFY Arg1:T16 Arg2:E6 +T17 Sign_symptom 262 270 palpable +E10 Sign_symptom:T17 +T18 Biological_structure 233 257 left inguinal lymph node +T19 Distance 228 232 5 cm +R6 MODIFY Arg1:T19 Arg2:E10 +R7 MODIFY Arg1:T18 Arg2:E10 +T20 Biological_structure 205 208 hip +R8 MODIFY Arg1:T20 Arg2:E6 +T21 Diagnostic_procedure 290 303 tumor markers +E11 Diagnostic_procedure:T21 +T22 Detailed_description 284 289 Serum +R9 MODIFY Arg1:T22 Arg2:E11 +T23 Diagnostic_procedure 315 318 CEA +E12 Diagnostic_procedure:T23 +T24 Diagnostic_procedure 323 330 CA 19-9 +E13 Diagnostic_procedure:T24 +R10 SUB_PROCEDURE Arg1:E12 Arg2:E11 +R11 SUB_PROCEDURE Arg1:E13 Arg2:E11 +T25 Qualitative_concept 337 357 within normal limits +R12 MODIFY Arg1:T25 Arg2:E11 +T26 Diagnostic_procedure 373 380 amylase +E14 Diagnostic_procedure:T26 +T27 Lab_value 382 390 227 IU/L +R13 MODIFY Arg1:T27 Arg2:E14 +T28 Diagnostic_procedure 419 425 lipase +E15 Diagnostic_procedure:T28 +T29 Detailed_description 367 372 serum +R14 MODIFY Arg1:T29 Arg2:E14 +R15 MODIFY Arg1:T29 Arg2:E15 +T30 Lab_value 427 435 378 IU/L +R16 MODIFY Arg1:T30 Arg2:E15 +T31 Diagnostic_procedure 457 476 fasting blood sugar +E16 Diagnostic_procedure:T31 +T32 Lab_value 478 487 144 mg/dL +R17 MODIFY Arg1:T32 Arg2:E16 +T33 Diagnostic_procedure 522 541 liver function test +E17 Diagnostic_procedure:T33 +T34 Diagnostic_procedure 560 586 aspartate aminotransferase +E18 Diagnostic_procedure:T34 +R18 SUB_PROCEDURE Arg1:E18 Arg2:E17 +T35 Diagnostic_procedure 624 648 alanine aminotransferase +E19 Diagnostic_procedure:T35 +R19 SUB_PROCEDURE Arg1:E19 Arg2:E17 +T36 Lab_value 588 596 178 IU/L +R20 MODIFY Arg1:T36 Arg2:E18 +T37 Lab_value 650 658 225 IU/L +R21 MODIFY Arg1:T37 Arg2:E19 +T38 Diagnostic_procedure 696 716 alkaline phosphatase +E20 Diagnostic_procedure:T38 +T39 Detailed_description 690 695 serum +R22 MODIFY Arg1:T39 Arg2:E20 +T40 Lab_value 718 726 370 IU/L +R23 MODIFY Arg1:T40 Arg2:E20 +T41 Qualitative_concept 766 785 above normal ranges +R24 MODIFY Arg1:T41 Arg2:E17 +R25 MODIFY Arg1:T41 Arg2:E14 +R26 MODIFY Arg1:T41 Arg2:E15 +R27 MODIFY Arg1:T41 Arg2:E16 +T42 Diagnostic_procedure 800 823 computerized tomography +E21 Diagnostic_procedure:T42 +T43 Diagnostic_procedure 825 827 CT +E22 Diagnostic_procedure:T43 +R28 IDENTICAL Arg1:E22 Arg2:E21 +T44 Biological_structure 790 799 abdominal +R29 MODIFY Arg1:T44 Arg2:E21 +T45 Sign_symptom 867 871 mass +E23 Sign_symptom:T45 +T46 Biological_structure 858 866 left hip +R30 MODIFY Arg1:T46 Arg2:E23 +T47 Sign_symptom 879 887 enlarged +E24 Sign_symptom:T47 +T48 Biological_structure 888 912 left inguinal lymph node +R31 MODIFY Arg1:T48 Arg2:E24 +T49 Sign_symptom 954 958 mass +E25 Sign_symptom:T49 +T50 Detailed_description 930 943 heterogeneous +T51 Detailed_description 944 953 enhancing +T52 Qualitative_concept 925 929 huge +R32 MODIFY Arg1:T52 Arg2:E25 +R33 MODIFY Arg1:T50 Arg2:E25 +R34 MODIFY Arg1:T51 Arg2:E25 +T53 Biological_structure 978 986 pancreas +R35 MODIFY Arg1:T53 Arg2:E25 +T54 Diagnostic_procedure 1005 1013 PET scan +E26 Diagnostic_procedure:T54 +T55 Disease_disorder 1026 1036 metastases +E27 Disease_disorder:T55 +A1 POLARITY E27 NEG +T56 Therapeutic_procedure 1066 1080 staged surgery +E28 Therapeutic_procedure:T56 +T57 Therapeutic_procedure 1114 1127 mass excision +E29 Therapeutic_procedure:T57 +R36 SUB_PROCEDURE Arg1:E29 Arg2:E28 +T58 Biological_structure 1105 1113 inguinal +T59 Biological_structure 1097 1100 hip +R37 MODIFY Arg1:T58 Arg2:E29 +R38 MODIFY Arg1:T59 Arg2:E29 +T60 Date 1131 1148 December 19, 2014 +E30 Date:T60 +T61 Diagnostic_procedure 1154 1178 histopathological report +E31 Diagnostic_procedure:T61 +T62 Disease_disorder 1212 1236 neuroendocrine carcinoma +E32 Disease_disorder:T62 +T63 Detailed_description 1190 1200 metastatic +T64 Detailed_description 1201 1211 small cell +R39 MODIFY Arg1:T64 Arg2:E32 +R40 MODIFY Arg1:T63 Arg2:E32 +T65 Distance 1244 1271 maximal diameter of 10.5 cm +R41 MODIFY Arg1:T65 Arg2:E33 +T66 Sign_symptom 1287 1291 mass +E33 Sign_symptom:T66 +T67 Sign_symptom 1303 1309 growth +E34 Sign_symptom:T67 +T68 Biological_structure 1279 1286 buttock +R42 MODIFY Arg1:T68 Arg2:E33 +T69 Distance 1298 1302 7 cm +R43 MODIFY Arg1:T69 Arg2:E34 +T70 Biological_structure 1316 1335 inguinal lymph node +R44 MODIFY Arg1:T70 Arg2:E34 +T71 Diagnostic_procedure 1341 1354 mitotic index +E35 Diagnostic_procedure:T71 +T72 Lab_value 1359 1385 over 50 mitoses per 50 HPF +E36 Lab_value:T72 +R45 MODIFY Arg1:E36 Arg2:E35 +T73 Diagnostic_procedure 1394 1405 Ki-67 index +E37 Diagnostic_procedure:T73 +T74 Lab_value 1418 1421 50% +E38 Lab_value:T74 +R46 MODIFY Arg1:E38 Arg2:E37 +T75 Date 1426 1442 January 21, 2015 +E39 Date:T75 +T76 Therapeutic_procedure 1465 1479 pancreatectomy +E40 Therapeutic_procedure:T76 +T77 Detailed_description 1459 1464 total +T78 Detailed_description 1486 1491 total +T79 Therapeutic_procedure 1492 1503 gastrectomy +E41 Therapeutic_procedure:T79 +R47 MODIFY Arg1:T78 Arg2:E41 +R48 MODIFY Arg1:T77 Arg2:E40 +T80 Sign_symptom 1535 1540 tumor +E42 Sign_symptom:T80 +T81 Biological_structure 1560 1568 pancreas +R49 MODIFY Arg1:T81 Arg2:E42 +T82 Area 1575 1598 9 cm × 6 cm in diameter +R50 MODIFY Arg1:T82 Arg2:E42 +T83 Biological_structure 1613 1632 left gastric artery +T84 Biological_structure 1634 1648 splenic artery +T85 Biological_structure 1654 1666 splenic vein +R51 MODIFY Arg1:T83 Arg2:E42 +T86 Diagnostic_procedure 1672 1696 histopathological report +E43 Diagnostic_procedure:T86 +R52 MODIFY Arg1:T84 Arg2:E42 +R53 MODIFY Arg1:T85 Arg2:E42 +T87 Sign_symptom 1734 1740 lesion +E44 Sign_symptom:T87 +T88 Detailed_description 1723 1733 metastatic +R54 MODIFY Arg1:T88 Arg2:E44 +T89 Sign_symptom 1760 1765 tumor +E45 Sign_symptom:T89 +T90 Biological_structure 1792 1803 lymph nodes +R55 MODIFY Arg1:T90 Arg2:E45 +T91 Quantitative_concept 1780 1791 8 of the 32 +R56 MODIFY Arg1:T91 Arg2:T90 +T92 Date 1824 1846 7th post-operative day +E46 Date:T92 +T93 Sign_symptom 1877 1882 fever +E47 Sign_symptom:T93 +T94 Sign_symptom 1887 1899 leukocytosis +E48 Sign_symptom:T94 +T95 Severity 1872 1876 high +R57 MODIFY Arg1:T95 Arg2:E47 +T96 Diagnostic_procedure 1930 1932 CT +E49 Diagnostic_procedure:T96 +T97 Biological_structure 1920 1929 abdominal +R58 MODIFY Arg1:T97 Arg2:E49 +T98 Sign_symptom 1963 1979 fluid collection +E50 Sign_symptom:T98 +T99 Detailed_description 1954 1962 infected +R59 MODIFY Arg1:T99 Arg2:E50 +T100 Biological_structure 1987 1997 lesser sac +R60 MODIFY Arg1:T100 Arg2:E50 +T101 Distance 2004 2016 4.7 cm-sized +T102 Sign_symptom 2027 2031 mass +E51 Sign_symptom:T102 +T103 Detailed_description 2017 2026 recurring +R61 MODIFY Arg1:T103 Arg2:E51 +R62 MODIFY Arg1:T101 Arg2:E51 +T104 Biological_structure 2079 2087 left hip +R63 MODIFY Arg1:T104 Arg2:E51 +T105 Disease_disorder 2117 2126 infection +E52 Disease_disorder:T105 +T106 Biological_structure 2134 2150 abdominal cavity +R64 MODIFY Arg1:T106 Arg2:E52 +T107 Medication 2166 2177 antibiotics +E53 Medication:T107 +T108 Therapeutic_procedure 2182 2189 removed +E54 Therapeutic_procedure:T108 +T109 Sign_symptom 2213 2217 mass +E55 Sign_symptom:T109 +R65 MODIFY Arg1:E55 Arg2:E54 +T110 Detailed_description 2203 2212 recurring +T111 Biological_structure 2194 2202 left hip +R66 MODIFY Arg1:T110 Arg2:E55 +R67 MODIFY Arg1:T111 Arg2:E55 +T112 Date 2221 2237 February 3, 2015 +E56 Date:T112 +T113 Diagnostic_procedure 2243 2257 histopathology +E57 Diagnostic_procedure:T113 +T114 Distance 2305 2331 maximum diameter of 7.5 cm +#1 AnnotatorNotes T114 Not connected as this is an implicit coreference +T115 Disease_disorder 2374 2387 complications +E58 Disease_disorder:T115 +A2 POLARITY E58 NEG +T116 Date 2391 2407 February 9, 2015 +E59 Date:T116 +* OVERLAP E4 E5 +R68 AFTER Arg1:E5 Arg2:E2 +* OVERLAP E2 E1 +R69 BEFORE Arg1:E1 Arg2:E3 +* OVERLAP E3 E6 E10 E11 E14 E15 E16 E17 E20 E21 E23 E24 E25 E26 E27 +T117 Detailed_description 146 151 large +R70 MODIFY Arg1:T117 Arg2:E6 +R71 BEFORE Arg1:E27 Arg2:E28 +* OVERLAP E28 E30 +R72 BEFORE Arg1:E30 Arg2:E31 +* OVERLAP E31 E32 E33 E34 E35 E37 +R73 BEFORE Arg1:E37 Arg2:E39 +* OVERLAP E39 E40 E41 E42 +R74 BEFORE Arg1:E42 Arg2:E43 +* OVERLAP E43 E44 E45 +R75 BEFORE Arg1:E45 Arg2:E46 +* OVERLAP E46 E47 E48 E49 E50 E51 E52 +R76 BEFORE Arg1:E52 Arg2:E53 +R77 BEFORE Arg1:E53 Arg2:E54 +* OVERLAP E54 E56 +R78 BEFORE Arg1:E56 Arg2:E57 +T118 Clinical_event 2349 2359 discharged +E60 Clinical_event:T118 +R79 BEFORE Arg1:E57 Arg2:E60 +* OVERLAP E60 E58 E59 +R80 BEFORE Arg1:E59 Arg2:E7