--- a +++ b/processing/MACCROBAT/26350418.ann @@ -0,0 +1,331 @@ +T1 Age 2 13 50-year-old +T2 Sex 14 18 male +T3 Clinical_event 31 39 admitted +E1 Clinical_event:T3 +T4 Nonbiological_location 47 57 Department +R1 MODIFY Arg1:T4 Arg2:E1 +T5 Sign_symptom 72 78 nodule +E2 Sign_symptom:T5 +T6 Biological_structure 64 71 thyroid +R2 MODIFY Arg1:T6 Arg2:E2 +T7 Biological_structure 86 108 right side of the neck +R3 MODIFY Arg1:T7 Arg2:E2 +T8 Diagnostic_procedure 161 171 ultrasound +E3 Diagnostic_procedure:T8 +T9 Detailed_description 153 160 Doppler +R4 MODIFY Arg1:T9 Arg2:E3 +T10 Biological_structure 145 152 carotid +R5 MODIFY Arg1:T10 Arg2:E3 +T11 Diagnostic_procedure 178 209 Fine-needle aspiration cytology +E4 Diagnostic_procedure:T11 +T12 Diagnostic_procedure 211 215 FNAC +E5 Diagnostic_procedure:T12 +R6 IDENTICAL Arg1:E5 Arg2:E4 +T13 Sign_symptom 237 243 lesion +E6 Sign_symptom:T13 +T14 Detailed_description 226 236 follicular +R7 MODIFY Arg1:T14 Arg2:E6 +T15 Diagnostic_procedure 264 274 evaluation +E7 Diagnostic_procedure:T15 +T16 Diagnostic_procedure 300 306 health +E8 Diagnostic_procedure:T16 +T17 Lab_value 295 299 good +E9 Lab_value:T17 +R8 MODIFY Arg1:E9 Arg2:E8 +T18 History 337 349 hypertension +T19 History 351 359 vitiligo +T20 History 365 379 celiac disease +T21 Sign_symptom 337 349 hypertension +E10 Sign_symptom:T21 +T22 Disease_disorder 351 359 vitiligo +E11 Disease_disorder:T22 +T23 Disease_disorder 365 379 celiac disease +E12 Disease_disorder:T23 +T24 Diagnostic_procedure 384 404 physical examination +E13 Diagnostic_procedure:T24 +T25 Sign_symptom 414 420 nodule +E14 Sign_symptom:T25 +T26 Detailed_description 408 413 small +R9 MODIFY Arg1:T26 Arg2:E14 +T27 Distance 422 426 1 cm +R10 MODIFY Arg1:T27 Arg2:E14 +T28 Biological_structure 448 466 right thyroid lobe +R11 MODIFY Arg1:T28 Arg2:E14 +T29 Sign_symptom 471 479 enlarged +E15 Sign_symptom:T29 +A1 POLARITY E15 NEG +T30 Biological_structure 480 496 neck lymph nodes +R12 MODIFY Arg1:T30 Arg2:E15 +T31 Diagnostic_procedure 517 527 ultrasound +E16 Diagnostic_procedure:T31 +T32 Biological_structure 512 516 Neck +R13 MODIFY Arg1:T32 Arg2:E16 +T33 Distance 537 543 1.3 cm +T34 Sign_symptom 555 561 nodule +E17 Sign_symptom:T34 +T35 Detailed_description 544 554 hypoechoic +R14 MODIFY Arg1:T35 Arg2:E17 +R15 MODIFY Arg1:T33 Arg2:E17 +T36 Detailed_description 567 584 irregular margins +R16 MODIFY Arg1:T36 Arg2:E17 +T37 Biological_structure 592 610 right thyroid lobe +R17 MODIFY Arg1:T37 Arg2:E17 +T38 Sign_symptom 649 656 nodules +E18 Sign_symptom:T38 +T39 Biological_structure 641 648 thyroid +R18 MODIFY Arg1:T39 Arg2:E18 +T40 Detailed_description 625 634 bilateral +T41 Detailed_description 635 640 small +R19 MODIFY Arg1:T41 Arg2:E18 +R20 MODIFY Arg1:T40 Arg2:E18 +T42 Distance 658 664 4–5 mm +R21 MODIFY Arg1:T42 Arg2:E18 +T43 Sign_symptom 685 693 enlarged +E19 Sign_symptom:T43 +A2 POLARITY E19 NEG +T44 Biological_structure 694 724 cervical bilateral lymph nodes +R22 MODIFY Arg1:T44 Arg2:E19 +T45 Diagnostic_procedure 726 748 Thyroid function tests +E20 Diagnostic_procedure:T45 +T46 Lab_value 754 760 normal +E21 Lab_value:T46 +R23 MODIFY Arg1:E21 Arg2:E20 +T47 Sign_symptom 781 803 thyroid autoantibodies +E22 Sign_symptom:T47 +A3 POLARITY E22 NEG +T48 Diagnostic_procedure 811 818 calcium +E23 Diagnostic_procedure:T48 +T49 Detailed_description 805 810 Serum +R24 MODIFY Arg1:T49 Arg2:E23 +T50 Lab_value 823 829 normal +E24 Lab_value:T50 +R25 MODIFY Arg1:E24 Arg2:E23 +T51 Lab_value 831 840 9.7 mg/dl +E25 Lab_value:T51 +R26 MODIFY Arg1:E25 Arg2:E23 +T52 Diagnostic_procedure 876 879 PTH +E26 Diagnostic_procedure:T52 +T53 Lab_value 982 999 slightly elevated +E27 Lab_value:T53 +R27 MODIFY Arg1:E27 Arg2:E26 +T54 Lab_value 1001 1009 68 pg/mL +E28 Lab_value:T54 +R28 MODIFY Arg1:E28 Arg2:E26 +T55 Diagnostic_procedure 920 927 calcium +E29 Diagnostic_procedure:T55 +T56 Detailed_description 914 919 serum +R29 MODIFY Arg1:T56 Arg2:E29 +T57 Therapeutic_procedure 973 980 surgery +E30 Therapeutic_procedure:T57 +T58 Biological_structure 965 972 thyroid +R30 MODIFY Arg1:T58 Arg2:E30 +T59 Nonbiological_location 935 941 Center +R31 MODIFY Arg1:T59 Arg2:E29 +R32 MODIFY Arg1:T59 Arg2:E26 +T60 Diagnostic_procedure 1114 1118 FNAC +E31 Diagnostic_procedure:T60 +T61 Sign_symptom 1142 1148 lesion +E32 Sign_symptom:T61 +T62 Biological_structure 1131 1141 follicular +R33 MODIFY Arg1:T62 Arg2:E32 +T63 Diagnostic_procedure 1169 1177 cytology +E33 Diagnostic_procedure:T63 +T64 Therapeutic_procedure 1407 1416 lobectomy +E34 Therapeutic_procedure:T64 +T65 Detailed_description 1401 1406 right +R34 MODIFY Arg1:T65 Arg2:E34 +T66 Diagnostic_procedure 1430 1441 exploration +E35 Diagnostic_procedure:T66 +T67 Biological_structure 1425 1429 neck +R35 MODIFY Arg1:T67 Arg2:E35 +T68 Diagnostic_procedure 1594 1603 histology +E36 Diagnostic_procedure:T68 +T69 Diagnostic_procedure 1883 1909 light microscopic findings +E37 Diagnostic_procedure:T69 +T70 Diagnostic_procedure 1918 1945 immunohistochemical profile +E38 Diagnostic_procedure:T70 +T71 Disease_disorder 1579 1581 PC +E39 Disease_disorder:T71 +A4 POLARITY E39 UNCERTAIN +#1 AnnotatorNotes E39 Parathyroid carcinoma +T72 Disease_disorder 1976 1978 PC +E40 Disease_disorder:T72 +#2 AnnotatorNotes E40 Parathyroid carcinoma +T73 Diagnostic_procedure 2000 2007 calcium +E41 Diagnostic_procedure:T73 +T74 Diagnostic_procedure 2024 2033 phosphate +E42 Diagnostic_procedure:T74 +T75 Diagnostic_procedure 2108 2115 calcium +E43 Diagnostic_procedure:T75 +T76 Diagnostic_procedure 2127 2130 PTH +E44 Diagnostic_procedure:T76 +T77 Diagnostic_procedure 2179 2189 ultrasound +E45 Diagnostic_procedure:T77 +T78 Diagnostic_procedure 2205 2224 computed tomography +E46 Diagnostic_procedure:T78 +T79 Date 2278 2296 Eight months later +E47 Date:T79 +T80 Diagnostic_procedure 2304 2311 calcium +E48 Diagnostic_procedure:T80 +T81 Diagnostic_procedure 2447 2457 ultrasound +E49 Diagnostic_procedure:T81 +T82 Biological_structure 2442 2446 Neck +R36 MODIFY Arg1:T82 Arg2:E49 +T83 Sign_symptom 2488 2495 lesions +E50 Sign_symptom:T83 +A5 POLARITY E50 NEG +T84 Detailed_description 2475 2487 pathological +R37 MODIFY Arg1:T84 Arg2:E50 +T85 Disease_disorder 2536 2540 PHPT +E51 Disease_disorder:T85 +A6 POLARITY E51 NEG +T86 Disease_disorder 2551 2553 PC +E52 Disease_disorder:T86 +T87 Sign_symptom 2591 2596 tumor +E53 Sign_symptom:T87 +T88 Detailed_description 2576 2590 nonfunctioning +R38 MODIFY Arg1:T88 Arg2:E53 +T89 Diagnostic_procedure 2626 2633 calcium +E54 Diagnostic_procedure:T89 +T90 Detailed_description 2620 2625 serum +R39 MODIFY Arg1:T90 Arg2:E54 +T91 Biological_structure 2638 2642 neck +T92 Diagnostic_procedure 2643 2653 ultrasound +E55 Diagnostic_procedure:T92 +T93 Subject 2661 2683 first-degree relatives +R40 MODIFY Arg1:T93 Arg2:E55 +R41 MODIFY Arg1:T91 Arg2:E55 +R42 MODIFY Arg1:T93 Arg2:E54 +T94 Lab_value 2688 2694 normal +E56 Lab_value:T94 +R43 MODIFY Arg1:E56 Arg2:E55 +R44 MODIFY Arg1:E56 Arg2:E54 +T95 Detailed_description 2316 2322 plasma +T96 Detailed_description 2298 2303 serum +R45 MODIFY Arg1:T96 Arg2:E48 +T97 Diagnostic_procedure 2323 2326 PTH +E57 Diagnostic_procedure:T97 +R46 MODIFY Arg1:T95 Arg2:E57 +T98 Lab_value 2339 2352 9.1–9.2 mg/dl +E58 Lab_value:T98 +T99 Lab_value 2357 2368 38–44 pg/ml +E59 Lab_value:T99 +R47 MODIFY Arg1:E58 Arg2:E48 +R48 MODIFY Arg1:E59 Arg2:E57 +T100 Biological_structure 2174 2178 Neck +T101 Biological_structure 2194 2204 total body +R49 MODIFY Arg1:T100 Arg2:E45 +R50 MODIFY Arg1:T101 Arg2:E46 +T102 Disease_disorder 2269 2276 disease +E60 Disease_disorder:T102 +A7 POLARITY E60 NEG +T103 Detailed_description 2258 2268 metastatic +T104 Detailed_description 2248 2253 local +R51 MODIFY Arg1:T103 Arg2:E60 +R52 MODIFY Arg1:T104 Arg2:E60 +T105 Therapeutic_procedure 2093 2100 surgery +E61 Therapeutic_procedure:T105 +T106 Date 2077 2092 One month after +E62 Date:T106 +T107 Detailed_description 2102 2107 serum +T108 Detailed_description 2120 2126 plasma +R53 MODIFY Arg1:T107 Arg2:E43 +R54 MODIFY Arg1:T108 Arg2:E44 +T109 Lab_value 2136 2145 9.6 mg/dL +E63 Lab_value:T109 +T110 Lab_value 2150 2158 47 pg/mL +E64 Lab_value:T110 +R55 MODIFY Arg1:E63 Arg2:E43 +R56 MODIFY Arg1:E64 Arg2:E44 +T111 Detailed_description 1994 1999 serum +R57 MODIFY Arg1:T111 Arg2:E41 +T112 Lab_value 2009 2018 8.7 mg/dl +E65 Lab_value:T112 +R58 MODIFY Arg1:E65 Arg2:E41 +T113 Lab_value 2035 2042 3 mg/dl +E66 Lab_value:T113 +R59 MODIFY Arg1:E66 Arg2:E42 +T114 Lab_value 2063 2075 normal range +E67 Lab_value:T114 +R60 MODIFY Arg1:E67 Arg2:E41 +R61 MODIFY Arg1:E67 Arg2:E42 +T115 Diagnostic_procedure 1740 1754 Immunostaining +E68 Diagnostic_procedure:T115 +T116 Diagnostic_procedure 1759 1772 thyroglobulin +E69 Diagnostic_procedure:T116 +T117 Diagnostic_procedure 1808 1822 chromogranin A +E70 Diagnostic_procedure:T117 +T118 Diagnostic_procedure 1827 1830 PTH +E71 Diagnostic_procedure:T118 +R62 SUB_PROCEDURE Arg1:E69 Arg2:E68 +R63 SUB_PROCEDURE Arg1:E70 Arg2:E68 +R64 SUB_PROCEDURE Arg1:E71 Arg2:E68 +T119 Lab_value 1840 1857 strong reactivity +E72 Lab_value:T119 +R65 MODIFY Arg1:E72 Arg2:E71 +R66 MODIFY Arg1:E72 Arg2:E70 +T120 Lab_value 1777 1785 negative +E73 Lab_value:T120 +R67 MODIFY Arg1:E73 Arg2:E69 +T121 Sign_symptom 1659 1664 tumor +E74 Sign_symptom:T121 +T122 Sign_symptom 1632 1651 infiltrative growth +E75 Sign_symptom:T122 +T123 Sign_symptom 1670 1678 invasion +E76 Sign_symptom:T123 +T124 Biological_structure 1686 1700 thyroid tissue +T125 Biological_structure 1705 1726 cervical soft tissues +R68 MODIFY Arg1:T124 Arg2:E76 +R69 MODIFY Arg1:T125 Arg2:E76 +T126 Sign_symptom 1484 1492 invasion +E77 Sign_symptom:T126 +A8 POLARITY E77 NEG +T127 Detailed_description 1478 1483 local +T128 Detailed_description 1457 1474 macroscopic signs +R70 MODIFY Arg1:T127 Arg2:E77 +R71 MODIFY Arg1:T128 Arg2:E77 +T129 Diagnostic_procedure 1528 1552 pathological examination +E78 Diagnostic_procedure:T129 +T130 Detailed_description 1513 1527 frozen-section +T131 Detailed_description 1498 1512 intraoperative +R72 MODIFY Arg1:T130 Arg2:E78 +R73 MODIFY Arg1:T131 Arg2:E78 +T132 Detailed_description 1622 1631 irregular +R74 MODIFY Arg1:T132 Arg2:E75 +T133 Sign_symptom 1185 1191 nodule +E79 Sign_symptom:T133 +T134 Sign_symptom 1347 1354 lesions +E80 Sign_symptom:T134 +T135 Biological_structure 1328 1346 thyroid follicular +R75 MODIFY Arg1:T135 Arg2:E80 +T136 Other_event 1199 1305 epithelial cells with hyperchromatic nuclei organized in small cohesive clusters resembling microfollicles +E81 Other_event:T136 +#3 AnnotatorNotes E81 Cytology results +R76 AFTER Arg1:E1 Arg2:E2 +* OVERLAP E2 E3 E4 E6 +R77 BEFORE Arg1:E6 Arg2:E7 +* OVERLAP E7 E8 +R78 AFTER Arg1:E8 Arg2:E10 +* OVERLAP E10 E11 E12 +R79 BEFORE Arg1:E12 Arg2:E13 +* OVERLAP E13 E14 E82 E15 E83 E16 E17 E18 E19 E20 E22 E23 E26 E29 E31 E32 E33 E79 E80 +T137 Sign_symptom 432 440 palpable +E82 Sign_symptom:T137 +R80 MODIFY Arg1:E14 Arg2:E82 +T138 Sign_symptom 502 510 palpable +E83 Sign_symptom:T138 +R81 MODIFY Arg1:T30 Arg2:E83 +A9 POLARITY E83 NEG +R82 MODIFY Arg1:E81 Arg2:E33 +R83 BEFORE Arg1:E80 Arg2:E34 +* OVERLAP E34 E35 E77 E78 E39 +R84 BEFORE Arg1:E39 Arg2:E36 +* OVERLAP E36 E75 E74 E76 E68 E37 E38 E40 +R85 BEFORE Arg1:E40 Arg2:E41 +* OVERLAP E41 E42 +R86 BEFORE Arg1:E42 Arg2:E62 +R87 AFTER Arg1:E62 Arg2:E61 +R88 BEFORE Arg1:E61 Arg2:E43 +* OVERLAP E43 E44 E45 E46 E60 +R89 BEFORE Arg1:E60 Arg2:E47 +* OVERLAP E47 E48 E57 E49 E50 E51 E52 E53 E54 E55