--- a +++ b/processing/MACCROBAT/26285706.ann @@ -0,0 +1,327 @@ +T1 Age 2 13 65-year old +T2 Sex 14 20 female +T3 Clinical_event 25 33 admitted +E1 Clinical_event:T3 +T4 Sign_symptom 51 60 dysphagia +E2 Sign_symptom:T4 +A1 TREND E2 INC +T5 Detailed_description 39 50 progressive +T6 Duration 65 73 2 months +E3 Duration:T6 +T7 Sign_symptom 83 94 weight loss +E4 Sign_symptom:T7 +T8 Mass 78 82 5 kg +R1 MODIFY Arg1:T8 Arg2:E4 +T9 History 141 153 osteoporosis +T10 Disease_disorder 141 153 osteoporosis +E5 Disease_disorder:T10 +T11 Medication 167 182 calcium lactate +E6 Medication:T11 +T12 Administration 183 190 tablets +T13 Dosage 192 197 daily +T14 Duration 203 210 5 years +E7 Duration:T14 +R2 MODIFY Arg1:T12 Arg2:E6 +R3 MODIFY Arg1:T13 Arg2:E6 +T15 Diagnostic_procedure 235 244 endoscopy +E8 Diagnostic_procedure:T15 +T16 Sign_symptom 2593 2605 asymptomatic +E9 Sign_symptom:T16 +T17 Sign_symptom 1434 1438 mass +E10 Sign_symptom:T17 +T18 Diagnostic_procedure 412 421 endoscopy +E11 Diagnostic_procedure:T18 +T19 Sign_symptom 797 805 enlarged +E12 Sign_symptom:T19 +T20 Biological_structure 776 792 esophageal lumen +R4 MODIFY Arg1:T20 Arg2:E12 +T21 Sign_symptom 813 824 diverticula +E13 Sign_symptom:T21 +T22 Biological_structure 844 858 posterior wall +R5 MODIFY Arg1:T22 Arg2:E13 +R6 MODIFY Arg1:T20 Arg2:E13 +T23 Diagnostic_procedure 865 884 computer tomography +E14 Diagnostic_procedure:T23 +T24 Biological_structure 892 898 thorax +R7 MODIFY Arg1:T24 Arg2:E14 +T25 Sign_symptom 923 928 tumor +E15 Sign_symptom:T25 +A2 POLARITY E15 NEG +T26 Detailed_description 910 922 pedunculated +R8 MODIFY Arg1:T26 Arg2:E15 +T27 Sign_symptom 979 983 mass +E16 Sign_symptom:T27 +T28 Biological_structure 968 978 esophageal +R9 MODIFY Arg1:T28 Arg2:E16 +T29 Detailed_description 958 967 calcified +T30 Detailed_description 944 957 intra-luminal +R10 MODIFY Arg1:T29 Arg2:E16 +R11 MODIFY Arg1:T30 Arg2:E16 +T31 Diagnostic_procedure 997 1005 biopsies +E17 Diagnostic_procedure:T31 +T32 Diagnostic_procedure 544 556 gastrografin +E18 Diagnostic_procedure:T32 +T33 Sign_symptom 424 431 pedicle +E19 Sign_symptom:T33 +A3 POLARITY E19 NEG +T34 Sign_symptom 275 279 mass +E20 Sign_symptom:T34 +T35 Biological_structure 287 303 middle esophagus +R12 MODIFY Arg1:T35 Arg2:E20 +T36 Distance 257 261 4 cm +R13 MODIFY Arg1:T36 Arg2:E20 +T37 Texture 270 274 firm +T38 Color 262 269 whitish +R14 MODIFY Arg1:T37 Arg2:E20 +R15 MODIFY Arg1:T38 Arg2:E20 +T39 Biological_structure 212 234 Upper gastrointestinal +R16 MODIFY Arg1:T39 Arg2:E8 +T40 Sign_symptom 344 349 ulcer +E21 Sign_symptom:T40 +T41 Detailed_description 318 338 semi-circumferential +T42 Severity 339 343 deep +R17 MODIFY Arg1:T41 Arg2:E21 +R18 MODIFY Arg1:T42 Arg2:E21 +T43 Shape 355 372 irregular borders +R19 MODIFY Arg1:T43 Arg2:E21 +T44 Biological_structure 380 395 opposite mucosa +R20 MODIFY Arg1:T44 Arg2:E21 +T45 Biological_structure 509 531 Upper gastrointestinal +R21 MODIFY Arg1:T45 Arg2:E18 +T46 Medication 2369 2376 calcium +E22 Medication:T46 +T47 Administration 2377 2384 tablets +R22 MODIFY Arg1:T47 Arg2:E22 +T48 Diagnostic_procedure 2611 2620 endoscopy +E23 Diagnostic_procedure:T48 +T49 Sign_symptom 2641 2649 enlarged +E24 Sign_symptom:T49 +A4 POLARITY E24 NEG +T50 Biological_structure 2650 2659 esophagus +R23 MODIFY Arg1:T50 Arg2:E24 +T51 Diagnostic_procedure 2665 2675 appearance +E25 Diagnostic_procedure:T51 +T52 Lab_value 2705 2711 normal +E26 Lab_value:T52 +R24 MODIFY Arg1:E26 Arg2:E25 +T53 Biological_structure 2683 2700 esophageal mucosa +R25 MODIFY Arg1:T53 Arg2:E25 +T54 Sign_symptom 2721 2732 ulcerations +E27 Sign_symptom:T54 +A5 POLARITY E27 NEG +T55 Sign_symptom 2741 2752 diverticula +E28 Sign_symptom:T55 +A6 POLARITY E28 NEG +T56 Diagnostic_procedure 463 480 polipectomy snare +E29 Diagnostic_procedure:T56 +T57 Sign_symptom 503 507 mass +E30 Sign_symptom:T57 +T58 Biological_structure 492 502 esophageal +R26 MODIFY Arg1:T58 Arg2:E30 +T59 Sign_symptom 591 596 image +E31 Sign_symptom:T59 +T60 Detailed_description 583 590 lacunar +T61 Shape 577 582 ovoid +R27 MODIFY Arg1:T61 Arg2:E31 +R28 MODIFY Arg1:T60 Arg2:E31 +T62 Biological_structure 604 643 distal part of the esophagus esophageal +R29 MODIFY Arg1:T62 Arg2:E31 +T64 Sign_symptom 665 679 calcifications +E33 Sign_symptom:T64 +T65 Texture 684 690 smooth +R30 MODIFY Arg1:T65 Arg2:E31 +T63 Detailed_description 645 658 inhomogeneous +R31 MODIFY Arg1:T63 Arg2:E31 +T66 Activity 708 719 peristalsis +E32 Activity:T66 +T67 Sign_symptom 724 729 image +E34 Sign_symptom:T67 +T68 Detailed_description 734 740 mobile +R32 MODIFY Arg1:T68 Arg2:E34 +T69 Sign_symptom 748 755 pedicle +E35 Sign_symptom:T69 +A7 POLARITY E35 NEG +T70 Sign_symptom 1035 1044 ulcerated +E36 Sign_symptom:T70 +T71 Biological_structure 1024 1034 esophageal +T72 Biological_structure 1045 1051 mucosa +R33 MODIFY Arg1:T72 Arg2:E36 +R34 MODIFY Arg1:T71 Arg2:E36 +T73 Sign_symptom 1061 1079 inflammatory cells +E37 Sign_symptom:T73 +T74 Sign_symptom 1089 1099 malignancy +E38 Sign_symptom:T74 +A8 POLARITY E38 NEG +T75 Diagnostic_procedure 1116 1126 endoscopic +E39 Diagnostic_procedure:T75 +T76 Diagnostic_procedure 1131 1140 imagistic +E40 Diagnostic_procedure:T76 +T77 Sign_symptom 1151 1157 bezoar +E41 Sign_symptom:T77 +A9 POLARITY E41 UNCERTAIN +T78 Sign_symptom 1211 1222 diverticula +E42 Sign_symptom:T78 +T79 Biological_structure 1200 1210 esophageal +R35 MODIFY Arg1:T79 Arg2:E42 +T80 Sign_symptom 1242 1251 ulcerated +E43 Sign_symptom:T80 +T81 Biological_structure 1252 1258 mucosa +R36 MODIFY Arg1:T81 Arg2:E43 +T82 Sign_symptom 1275 1279 mass +E44 Sign_symptom:T82 +T83 Biological_structure 1264 1274 esophageal +R37 MODIFY Arg1:T83 Arg2:E44 +T84 Therapeutic_procedure 1284 1291 removed +E45 Therapeutic_procedure:T84 +T85 Diagnostic_procedure 1300 1316 endoscopic snare +E46 Diagnostic_procedure:T85 +T86 Therapeutic_procedure 1338 1351 fragmentation +E47 Therapeutic_procedure:T86 +A10 POLARITY E47 NEG +T87 Diagnostic_procedure 1385 1407 macroscopic appearance +E48 Diagnostic_procedure:T87 +T88 Diagnostic_procedure 1547 1570 macroscopic examination +E49 Diagnostic_procedure:T88 +T89 Distance 1419 1423 4 cm +T90 Shape 1425 1433 globular +R38 MODIFY Arg1:T90 Arg2:E10 +R39 MODIFY Arg1:T89 Arg2:E10 +T91 Detailed_description 1440 1453 heterogeneous +T92 Detailed_description 1455 1460 dense +T93 Color 1462 1469 whitish +R40 MODIFY Arg1:T91 Arg2:E10 +R41 MODIFY Arg1:T92 Arg2:E10 +R42 MODIFY Arg1:T93 Arg2:E10 +T94 Detailed_description 1499 1503 foci +T95 Color 1486 1498 harsh yellow +R43 MODIFY Arg1:T95 Arg2:T94 +R44 MODIFY Arg1:T94 Arg2:E10 +T96 Sign_symptom 1528 1541 calcification +E50 Sign_symptom:T96 +A11 POLARITY E50 MAYBE_POS +T97 Detailed_description 1517 1527 dystrophic +R45 MODIFY Arg1:T97 Arg2:E50 +T98 Color 1599 1609 light gray +T99 Sign_symptom 1610 1616 aspect +E51 Sign_symptom:T99 +T100 Texture 1618 1636 fibrous appearance +R46 MODIFY Arg1:T100 Arg2:E51 +R47 MODIFY Arg1:T98 Arg2:E51 +T101 Color 1661 1680 harsh yellow-orange +T102 Detailed_description 1681 1691 structures +R48 MODIFY Arg1:T101 Arg2:T102 +R49 MODIFY Arg1:T102 Arg2:E51 +T103 Sign_symptom 1728 1732 mass +E52 Sign_symptom:T103 +T104 Diagnostic_procedure 1751 1770 trichloracetic acid +E53 Diagnostic_procedure:T104 +T105 Diagnostic_procedure 1792 1815 Microscopic examination +E54 Diagnostic_procedure:T105 +T106 Sign_symptom 2772 2793 motility disturbances +E55 Sign_symptom:T106 +A12 POLARITY E55 NEG +T107 Diagnostic_procedure 2819 2828 manometry +E56 Diagnostic_procedure:T107 +T108 Biological_structure 2808 2818 esophageal +R50 MODIFY Arg1:T108 Arg2:E56 +T109 Detailed_description 1652 1660 multiple +R51 MODIFY Arg1:T109 Arg2:T102 +T110 Diagnostic_procedure 1775 1790 decalcification +E57 Diagnostic_procedure:T110 +R52 SUB_PROCEDURE Arg1:E53 Arg2:E57 +R53 MODIFY Arg1:E52 Arg2:E57 +T111 Sign_symptom 1825 1847 hyaline fibrous tissue +E58 Sign_symptom:T111 +T112 Diagnostic_procedure 1878 1891 Tricrom Mason +E59 Diagnostic_procedure:T112 +T113 Lab_value 1858 1874 stained in green +E60 Lab_value:T113 +R54 MODIFY Arg1:E60 Arg2:E59 +T114 Sign_symptom 1928 1937 basophils +E61 Sign_symptom:T114 +T115 Diagnostic_procedure 1965 1975 fibrocytes +E62 Diagnostic_procedure:T115 +T116 Sign_symptom 1938 1958 deposits of minerals +E63 Sign_symptom:T116 +T117 Diagnostic_procedure 1989 1996 vessels +E64 Diagnostic_procedure:T117 +T118 Lab_value 1980 1988 very few +E65 Lab_value:T118 +R55 MODIFY Arg1:E65 Arg2:E64 +T119 Shape 1916 1927 crystalline +R56 MODIFY Arg1:T119 Arg2:E61 +T120 Sign_symptom 2014 2034 capillary structures +E66 Sign_symptom:T120 +T121 Diagnostic_procedure 2041 2052 fibroblasts +E67 Diagnostic_procedure:T121 +T122 Lab_value 1960 1964 rare +E68 Lab_value:T122 +R57 MODIFY Arg1:E68 Arg2:E62 +T123 Lab_value 2036 2040 rare +E69 Lab_value:T123 +R58 MODIFY Arg1:E69 Arg2:E67 +R59 SUB_PROCEDURE Arg1:E62 Arg2:E54 +R60 SUB_PROCEDURE Arg1:E64 Arg2:E54 +R61 SUB_PROCEDURE Arg1:E59 Arg2:E54 +T124 Sign_symptom 2057 2072 collagen fibers +E70 Sign_symptom:T124 +T125 Sign_symptom 2121 2125 mass +E71 Sign_symptom:T125 +A13 POLARITY E71 UNCERTAIN +T126 Biological_structure 2097 2120 mesenchymal originating +R62 MODIFY Arg1:T126 Arg2:E71 +T127 Disease_disorder 2141 2160 fibrovascular polyp +E72 Disease_disorder:T127 +A14 POLARITY E72 UNCERTAIN +T128 Sign_symptom 2223 2230 pedicle +E73 Sign_symptom:T128 +T129 Sign_symptom 2330 2337 pedicle +E74 Sign_symptom:T129 +A15 POLARITY E73 UNCERTAIN +A16 POLARITY E74 UNCERTAIN +T130 Sign_symptom 2529 2538 basophils +E75 Sign_symptom:T130 +T131 Sign_symptom 2539 2559 deposits of minerals +E76 Sign_symptom:T131 +T132 Shape 2517 2528 crystalline +R63 MODIFY Arg1:T132 Arg2:E75 +T133 Date 2561 2576 One month later +E77 Date:T133 +T134 History 2864 2897 history of calcium lactate intake +T135 Medication 2875 2890 calcium lactate +E78 Medication:T135 +T136 Diagnostic_procedure 2902 2925 histological appearance +E79 Diagnostic_procedure:T136 +T137 Biological_structure 2944 2954 esophageal +T138 Severity 2955 2961 benign +T139 Sign_symptom 2986 2990 mass +E80 Sign_symptom:T139 +T140 Disease_disorder 3008 3027 fibrovascular polyp +E81 Disease_disorder:T140 +A17 POLARITY E81 MAYBE_POS +T141 Other_event 3029 3043 auto-amputated +E82 Other_event:T141 +T142 Sign_symptom 3048 3057 calcified +E83 Sign_symptom:T142 +R64 MODIFY Arg1:T138 Arg2:E80 +R65 MODIFY Arg1:T137 Arg2:E80 +T143 Biological_structure 2962 2985 mesenchymal originating +R66 MODIFY Arg1:T143 Arg2:E80 +A18 POLARITY E80 MAYBE_POS +R67 MODIFY Arg1:E80 Arg2:E82 +R68 MODIFY Arg1:E81 Arg2:E82 +R69 CAUSE Arg1:E82 Arg2:E83 +R70 MODIFY Arg1:T5 Arg2:E2 +R71 AFTER Arg1:E1 Arg2:E2 +* OVERLAP E2 E3 E4 +R72 AFTER Arg1:E4 Arg2:E5 +R73 BEFORE Arg1:E5 Arg2:E6 +* OVERLAP E6 E7 +R74 BEFORE Arg1:E7 Arg2:E8 +* OVERLAP E8 E20 E21 E11 E19 E29 E30 E18 E31 E33 E32 E34 E35 E12 E13 E14 E15 E16 E17 E36 E37 E38 E39 E40 E41 E42 E43 +R75 CAUSE Arg1:E32 Arg2:E34 +R76 BEFORE Arg1:E43 Arg2:E44 +A19 POLARITY E44 NEG +* OVERLAP E44 E45 E46 E47 E48 E10 E50 E49 E51 E52 E57 E54 E58 E61 E63 E66 E67 E70 E71 E72 E73 E74 E22 E75 E76 +R77 BEFORE Arg1:E76 Arg2:E77 +* OVERLAP E77 E9 E23 E24 E25 E27 E28 E55 E56 E78 E79 E80 E81 E82 E83