--- a +++ b/processing/MACCROBAT/26228535.ann @@ -0,0 +1,372 @@ +T1 Age 2 13 25-year-old +T2 Sex 14 20 female +T3 Disease_disorder 52 63 visual loss +E1 Disease_disorder:T3 +T4 Detailed_description 41 51 left-sided +R1 MODIFY Arg1:T4 Arg2:E1 +T5 Disease_disorder 68 78 amenorrhea +E2 Disease_disorder:T5 +T6 Date 79 92 2 years prior +E3 Date:T6 +T7 Disease_disorder 119 130 hemiparesis +E4 Disease_disorder:T7 +T8 Detailed_description 113 118 right +R2 MODIFY Arg1:T8 Arg2:E4 +T9 Date 142 161 6 months beforehand +E5 Date:T9 +T10 Sign_symptom 174 182 symptoms +E6 Sign_symptom:T10 +T11 Severity 163 173 Aggravated +R3 MODIFY Arg1:T11 Arg2:E6 +T12 Sign_symptom 184 192 drooping +E7 Sign_symptom:T12 +T13 Biological_structure 196 215 corner of right lip +R4 MODIFY Arg1:T13 Arg2:E7 +T14 Disease_disorder 239 249 hemianopia +E8 Disease_disorder:T14 +T15 Detailed_description 230 238 temporal +T16 Detailed_description 220 229 bilateral +R5 MODIFY Arg1:T15 Arg2:E8 +R6 MODIFY Arg1:T16 Arg2:E8 +T17 Clinical_event 268 283 hospitalization +E9 Clinical_event:T17 +T18 Distance 310 315 >5 cm +T19 Severity 301 308 massive +T20 Sign_symptom 317 322 tumor +E10 Sign_symptom:T20 +T21 Biological_structure 326 357 intra- and suprasellar location +R7 MODIFY Arg1:T21 Arg2:E10 +T22 Detailed_description 359 391 excluding mesencephalon backward +R8 MODIFY Arg1:T22 Arg2:E10 +R9 MODIFY Arg1:T18 Arg2:E10 +R10 MODIFY Arg1:T19 Arg2:E10 +T23 Diagnostic_procedure 405 428 computerized tomography +E11 Diagnostic_procedure:T23 +T24 Diagnostic_procedure 430 432 CT +E12 Diagnostic_procedure:T24 +T25 Biological_structure 441 445 head +R11 MODIFY Arg1:T25 Arg2:E11 +R12 IDENTICAL Arg1:E12 Arg2:E11 +T26 Diagnostic_procedure 516 525 prolactin +E13 Diagnostic_procedure:T26 +T27 Diagnostic_procedure 527 530 PRL +E14 Diagnostic_procedure:T27 +R13 IDENTICAL Arg1:E14 Arg2:E13 +T28 Lab_value 484 500 exceedingly high +R14 MODIFY Arg1:T28 Arg2:E13 +T29 Biological_structure 501 506 serum +R15 MODIFY Arg1:T29 Arg2:E13 +T30 Lab_value 533 543 4408 ng/ml +R16 MODIFY Arg1:T30 Arg2:E13 +T31 Diagnostic_procedure 568 592 other pituitary hormones +E15 Diagnostic_procedure:T31 +T32 Lab_value 598 621 within reference ranges +R17 MODIFY Arg1:T32 Arg2:E15 +T33 Diagnostic_procedure 622 637 (growth hormone +E16 Diagnostic_procedure:T33 +T34 Diagnostic_procedure 639 641 GH +E17 Diagnostic_procedure:T34 +R18 IDENTICAL Arg1:E17 Arg2:E16 +R19 SUB_PROCEDURE Arg1:E16 Arg2:E15 +T35 Lab_value 644 654 0.50 ng/ml +R20 MODIFY Arg1:T35 Arg2:E16 +T36 Diagnostic_procedure 656 675 luteinizing hormone +E18 Diagnostic_procedure:T36 +T37 Diagnostic_procedure 677 679 LH +E19 Diagnostic_procedure:T37 +R21 IDENTICAL Arg1:E19 Arg2:E18 +T38 Lab_value 682 693 2.60 mIU/ml +R22 MODIFY Arg1:T38 Arg2:E18 +T39 Diagnostic_procedure 695 723 follicle-stimulating hormone +E20 Diagnostic_procedure:T39 +T40 Diagnostic_procedure 725 728 FSH +E21 Diagnostic_procedure:T40 +R23 IDENTICAL Arg1:E21 Arg2:E20 +T41 Diagnostic_procedure 744 771 adrenocorticotropic hormone +E22 Diagnostic_procedure:T41 +T42 Diagnostic_procedure 773 777 ACTH +E23 Diagnostic_procedure:T42 +R24 IDENTICAL Arg1:E23 Arg2:E22 +T43 Lab_value 780 790 37.4 pg/ml +R25 MODIFY Arg1:T43 Arg2:E22 +T44 Lab_value 731 742 4.57 mIU/ml +R26 MODIFY Arg1:T44 Arg2:E20 +T45 Diagnostic_procedure 792 819 thyroid-stimulating hormone +E24 Diagnostic_procedure:T45 +T46 Diagnostic_procedure 821 824 TSH +E25 Diagnostic_procedure:T46 +R27 IDENTICAL Arg1:E25 Arg2:E24 +T47 Lab_value 827 838 2.68 μIU/ml +R28 MODIFY Arg1:T47 Arg2:E24 +T48 Detailed_description 841 852 T1-weighted +T49 Diagnostic_procedure 853 871 magnetic resonance +E26 Diagnostic_procedure:T49 +T50 Diagnostic_procedure 873 875 MR +E27 Diagnostic_procedure:T50 +R29 IDENTICAL Arg1:E27 Arg2:E26 +R30 MODIFY Arg1:T48 Arg2:E26 +T51 Detailed_description 890 898 contrast +T52 Detailed_description 900 910 gadolinium +R31 MODIFY Arg1:T52 Arg2:T51 +R32 MODIFY Arg1:T51 Arg2:E26 +T53 Sign_symptom 931 936 tumor +E28 Sign_symptom:T53 +T54 Detailed_description 919 930 homogeneous +R33 MODIFY Arg1:T54 Arg2:E28 +T56 Sign_symptom 978 987 edematous +E30 Sign_symptom:T56 +T57 Diagnostic_procedure 991 1008 T2-weighted views +E31 Diagnostic_procedure:T57 +R35 SUB_PROCEDURE Arg1:E31 Arg2:E26 +A1 POLARITY E30 NEG +T58 Biological_structure 954 969 adjacent tissue +R36 MODIFY Arg1:T58 Arg2:E30 +R37 MODIFY Arg1:T58 Arg2:E31 +T59 Sign_symptom 1014 1018 mass +E32 Sign_symptom:T59 +T60 Sign_symptom 1027 1034 regress +E33 Sign_symptom:T60 +A2 POLARITY E33 NEG +T61 Duration 1046 1052 4-week +E34 Duration:T61 +T62 Medication 1067 1082 dopamine analog +E35 Medication:T62 +T63 Medication 1084 1095 cabergoline +E36 Medication:T63 +T64 Dosage 1097 1106 1 mg/week +R38 MODIFY Arg1:T64 Arg2:E36 +R39 SUB_PROCEDURE Arg1:E36 Arg2:E35 +T65 Diagnostic_procedure 1119 1122 PRL +E37 Diagnostic_procedure:T65 +T66 Biological_structure 1113 1118 serum +R40 MODIFY Arg1:T66 Arg2:E37 +T67 Lab_value 1130 1140 2207 ng/ml +T68 Lab_value 1151 1159 elevated +R41 MODIFY Arg1:T67 Arg2:E37 +R42 MODIFY Arg1:T68 Arg2:E37 +T69 Sign_symptom 1231 1239 enlarged +E38 Sign_symptom:T69 +T70 Severity 1240 1248 somewhat +R43 MODIFY Arg1:T70 Arg2:E38 +T71 Biological_structure 1198 1221 right lateral ventricle +R44 MODIFY Arg1:T71 Arg2:E38 +T72 Sign_symptom 1257 1268 obstruction +E39 Sign_symptom:T72 +T73 Biological_structure 1272 1288 foramen of Monro +R45 MODIFY Arg1:T73 Arg2:E39 +R46 CAUSE Arg1:E39 Arg2:E38 +T74 Therapeutic_procedure 1340 1349 debulking +E40 Therapeutic_procedure:T74 +T75 Detailed_description 1331 1339 surgical +R47 MODIFY Arg1:T75 Arg2:E40 +T76 Therapeutic_procedure 1386 1396 craniotomy +E41 Therapeutic_procedure:T76 +T77 Therapeutic_procedure 1410 1434 transsphenoidal approach +E42 Therapeutic_procedure:T77 +R48 SUB_PROCEDURE Arg1:E41 Arg2:E40 +R49 SUB_PROCEDURE Arg1:E42 Arg2:E40 +T78 Sign_symptom 1472 1477 tumor +E43 Sign_symptom:T78 +T79 Texture 1440 1456 hardened elastic +R50 MODIFY Arg1:T79 Arg2:E43 +T80 Sign_symptom 1493 1504 attachments +E44 Sign_symptom:T80 +T81 Severity 1486 1492 strong +R51 MODIFY Arg1:T81 Arg2:E44 +T82 Biological_structure 1508 1530 neighboring structures +R52 MODIFY Arg1:T82 Arg2:E44 +T83 Therapeutic_procedure 1541 1557 complete removal +E45 Therapeutic_procedure:T83 +A3 POLARITY E45 NEG +T84 Sign_symptom 1571 1582 mass effect +E46 Sign_symptom:T84 +A4 TREND E46 DEC +T85 Diagnostic_procedure 1619 1622 PRL +E47 Diagnostic_procedure:T85 +T86 Biological_structure 1613 1618 serum +R53 MODIFY Arg1:T86 Arg2:E47 +T87 Lab_value 1629 1637 declined +T88 Lab_value 1642 1651 250 ng/ml +R54 MODIFY Arg1:T87 Arg2:E47 +R55 MODIFY Arg1:T88 Arg2:E47 +T89 Diagnostic_procedure 1713 1716 PRL +E48 Diagnostic_procedure:T89 +T90 Medication 1772 1783 cabergoline +E49 Medication:T90 +T91 Dosage 1800 1810 0.5 mg/day +R56 MODIFY Arg1:T91 Arg2:E49 +T92 Lab_value 1696 1709 normalization +R57 MODIFY Arg1:T92 Arg2:E48 +T93 Sign_symptom 1853 1861 regrowth +E50 Sign_symptom:T93 +A5 POLARITY E50 NEG +T94 Sign_symptom 1873 1883 metastasis +E51 Sign_symptom:T94 +A6 POLARITY E51 NEG +T95 Detailed_description 1865 1872 distant +R58 MODIFY Arg1:T95 Arg2:E51 +T96 Date 1884 1896 1 year after +E52 Date:T96 +T97 Diagnostic_procedure 1906 1925 Histopathologically +E53 Diagnostic_procedure:T97 +T98 Diagnostic_procedure 1927 1948 hematoxylin and eosin +E54 Diagnostic_procedure:T98 +T99 Diagnostic_procedure 1950 1953 H&E +E55 Diagnostic_procedure:T99 +R59 IDENTICAL Arg1:E55 Arg2:E54 +R60 SUB_PROCEDURE Arg1:E54 Arg2:E53 +T100 Diagnostic_procedure 2141 2150 cytoplasm +E56 Diagnostic_procedure:T100 +T101 Diagnostic_procedure 2117 2123 nuclei +E57 Diagnostic_procedure:T101 +T102 Lab_value 2128 2140 eosinophilic +T103 Shape 2107 2116 elongated +T104 Shape 2098 2102 oval +T105 Shape 2091 2096 round +T106 Sign_symptom 2072 2085 spindle cells +E58 Sign_symptom:T106 +T107 Biological_structure 1975 1984 specimens +R61 MODIFY Arg1:T107 Arg2:E54 +T108 Detailed_description 2058 2067 polygonal +R62 MODIFY Arg1:T108 Arg2:E58 +R63 MODIFY Arg1:T105 Arg2:E57 +R64 MODIFY Arg1:T104 Arg2:E57 +R65 MODIFY Arg1:T103 Arg2:E57 +R66 MODIFY Arg1:T102 Arg2:E56 +R67 MODIFY Arg1:E58 Arg2:E57 +R68 MODIFY Arg1:E58 Arg2:E56 +R69 SUB_PROCEDURE Arg1:E57 Arg2:E54 +R70 SUB_PROCEDURE Arg1:E56 Arg2:E54 +T109 Coreference 2167 2172 cells +E59 Coreference:T109 +R71 IDENTICAL Arg1:E59 Arg2:E58 +T110 Detailed_description 2180 2195 irregular nests +T111 Detailed_description 2199 2214 short fascicles +T112 Detailed_description 2231 2287 frequent hyaline changes in vessel walls and vacuolation +R72 MODIFY Arg1:T110 Arg2:E59 +R73 MODIFY Arg1:T111 Arg2:E59 +R74 MODIFY Arg1:T112 Arg2:E59 +T113 Sign_symptom 2303 2323 nuclear pleomorphism +E60 Sign_symptom:T113 +T114 Sign_symptom 2368 2385 high mitotic rate +E61 Sign_symptom:T114 +A7 POLARITY E61 NEG +T115 Sign_symptom 2390 2398 necrosis +E62 Sign_symptom:T115 +A8 POLARITY E62 NEG +T116 Sign_symptom 2436 2450 fibrous change +E63 Sign_symptom:T116 +T117 Biological_structure 2454 2466 tumor stroma +R75 MODIFY Arg1:T117 Arg2:E63 +T118 Diagnostic_procedure 2559 2588 Pearse’s Periodic Acid Schiff +E64 Diagnostic_procedure:T118 +T119 Diagnostic_procedure 2590 2593 PAS +E65 Diagnostic_procedure:T119 +R76 IDENTICAL Arg1:E65 Arg2:E64 +T120 Biological_structure 2530 2541 tumor cells +R77 MODIFY Arg1:T120 Arg2:E64 +T121 Lab_value 2507 2519 chromophobic +R78 MODIFY Arg1:T121 Arg2:E64 +T122 Diagnostic_procedure 2611 2623 Immunostains +E66 Diagnostic_procedure:T122 +T123 Diagnostic_procedure 2661 2664 PRL +E67 Diagnostic_procedure:T123 +T124 Diagnostic_procedure 2675 2689 chromogranin-A +E68 Diagnostic_procedure:T124 +T125 Diagnostic_procedure 2695 2708 synaptophysin +E69 Diagnostic_procedure:T125 +R79 SUB_PROCEDURE Arg1:E67 Arg2:E66 +R80 SUB_PROCEDURE Arg1:E68 Arg2:E66 +R81 SUB_PROCEDURE Arg1:E69 Arg2:E66 +T126 Lab_value 2646 2656 positivity +R82 MODIFY Arg1:T126 Arg2:E67 +R83 MODIFY Arg1:T126 Arg2:E68 +R84 MODIFY Arg1:T126 Arg2:E69 +T127 Diagnostic_procedure 2713 2727 other hormones +E70 Diagnostic_procedure:T127 +T128 Diagnostic_procedure 2729 2731 GH +E71 Diagnostic_procedure:T128 +T129 Diagnostic_procedure 2733 2736 TSH +E72 Diagnostic_procedure:T129 +T130 Diagnostic_procedure 2738 2742 ACTH +E73 Diagnostic_procedure:T130 +T131 Diagnostic_procedure 2744 2746 LH +E74 Diagnostic_procedure:T131 +T132 Diagnostic_procedure 2748 2751 FSH +E75 Diagnostic_procedure:T132 +R85 SUB_PROCEDURE Arg1:E71 Arg2:E70 +R86 SUB_PROCEDURE Arg1:E72 Arg2:E70 +R87 SUB_PROCEDURE Arg1:E73 Arg2:E70 +R88 SUB_PROCEDURE Arg1:E74 Arg2:E70 +R89 SUB_PROCEDURE Arg1:E75 Arg2:E70 +T133 Lab_value 2710 2712 No +R90 MODIFY Arg1:T133 Arg2:E70 +T134 Diagnostic_procedure 2792 2805 other markers +E76 Diagnostic_procedure:T134 +T135 Lab_value 2986 2994 negative +T136 Diagnostic_procedure 2817 2830 S-100 protein +E77 Diagnostic_procedure:T136 +T137 Diagnostic_procedure 2841 2872 glial fibrillary acidic protein +E78 Diagnostic_procedure:T137 +T138 Diagnostic_procedure 2874 2878 GFAP +E79 Diagnostic_procedure:T138 +R92 IDENTICAL Arg1:E79 Arg2:E78 +T139 Diagnostic_procedure 2881 2908 epithelial membrane antigen +E80 Diagnostic_procedure:T139 +T140 Diagnostic_procedure 2910 2913 EMA +E81 Diagnostic_procedure:T140 +R93 IDENTICAL Arg1:E81 Arg2:E80 +T141 Diagnostic_procedure 2916 2935 cytokeratin AE1/AE3 +E82 Diagnostic_procedure:T141 +T142 Diagnostic_procedure 2937 2947 CK AE1/AE3 +E83 Diagnostic_procedure:T142 +R94 IDENTICAL Arg1:E83 Arg2:E82 +T143 Diagnostic_procedure 2950 2958 vimentin +E84 Diagnostic_procedure:T143 +T144 Diagnostic_procedure 2960 2963 p53 +E85 Diagnostic_procedure:T144 +T145 Diagnostic_procedure 2969 2974 bcl-2 +E86 Diagnostic_procedure:T145 +R95 BEFORE Arg1:E77 Arg2:E76 +R96 BEFORE Arg1:E78 Arg2:E76 +R97 SUB_PROCEDURE Arg1:E80 Arg2:E76 +R98 SUB_PROCEDURE Arg1:E82 Arg2:E76 +R99 SUB_PROCEDURE Arg1:E84 Arg2:E76 +R100 SUB_PROCEDURE Arg1:E85 Arg2:E76 +R91 SUB_PROCEDURE Arg1:E86 Arg2:E76 +R101 MODIFY Arg1:T135 Arg2:E76 +T146 Diagnostic_procedure 3014 3034 Ki-67 labeling index +E87 Diagnostic_procedure:T146 +T147 Lab_value 3053 3056 2 % +R102 MODIFY Arg1:T147 Arg2:E87 +T148 Disease_disorder 3093 3110 pituitary adenoma +E88 Disease_disorder:T148 +T149 Detailed_description 3079 3092 PRL-producing +R103 MODIFY Arg1:T149 Arg2:E88 +* OVERLAP E1 E2 E3 +T150 Clinical_event 102 106 seen +E89 Clinical_event:T150 +R104 BEFORE Arg1:E3 Arg2:E89 +R105 AFTER Arg1:E89 Arg2:E4 +* OVERLAP E4 E5 +R106 BEFORE Arg1:E5 Arg2:E6 +* OVERLAP E6 E7 E8 +R107 BEFORE Arg1:E8 Arg2:E9 +* OVERLAP E9 E10 E11 E13 E15 E26 E28 E30 +R108 SUB_PROCEDURE Arg1:E18 Arg2:E15 +R109 SUB_PROCEDURE Arg1:E20 Arg2:E15 +R110 SUB_PROCEDURE Arg1:E22 Arg2:E15 +R111 SUB_PROCEDURE Arg1:E24 Arg2:E15 +T55 Detailed_description 937 948 enhancement +R34 MODIFY Arg1:T55 Arg2:E28 +R112 BEFORE Arg1:E30 Arg2:E32 +* OVERLAP E32 E33 E34 E35 E37 E38 E39 +R113 MODIFY Arg1:E34 Arg2:E35 +R114 BEFORE Arg1:E39 Arg2:E40 +* OVERLAP E40 E43 E44 E45 +R115 BEFORE Arg1:E45 Arg2:E46 +* OVERLAP E46 E47 E48 E49 +R116 BEFORE Arg1:E49 Arg2:E50 +* OVERLAP E50 E51 E52 +R117 AFTER Arg1:E52 Arg2:E53 +* OVERLAP E58 E59 E60 E61 E62 E63 E64 E66 E70 E76 E87 E88