--- a +++ b/processing/MACCROBAT/25661749.ann @@ -0,0 +1,407 @@ +T1 Age 2 13 68-year-old +T2 Sex 14 17 man +T3 Subject 34 49 his optometrist +T4 Clinical_event 22 30 referred +E1 Clinical_event:T4 +T5 Nonbiological_location 53 56 HES +T6 Disease_disorder 72 75 LTG +E2 Disease_disorder:T6 +A1 POLARITY E2 MAYBE_POS +T7 Diagnostic_procedure 104 129 visual field test results +E3 Diagnostic_procedure:T7 +T8 Detailed_description 83 103 repeatedly irregular +R1 MODIFY Arg1:T8 Arg2:E3 +T9 Diagnostic_procedure 167 188 intraocular pressures +E4 Diagnostic_procedure:T9 +T10 Diagnostic_procedure 190 194 IOPs +E5 Diagnostic_procedure:T10 +R2 IDENTICAL Arg1:E5 Arg2:E4 +T11 Disease_disorder 220 228 glaucoma +E6 Disease_disorder:T11 +T12 Family_history 220 228 glaucoma +T13 Diagnostic_procedure 140 158 optic disc cupping +E7 Diagnostic_procedure:T13 +T14 Detailed_description 131 139 advanced +R3 MODIFY Arg1:T14 Arg2:E7 +T15 Lab_value 160 166 normal +R4 MODIFY Arg1:T15 Arg2:E4 +T16 Biological_structure 286 294 left eye +T17 Biological_structure 296 298 LE +R5 IDENTICAL Arg1:T17 Arg2:T16 +T18 Lab_value 339 345 6/6 N5 +T19 Date 370 386 6 months earlier +E8 Date:T19 +T20 Diagnostic_procedure 322 335 visual acuity +E9 Diagnostic_procedure:T20 +T21 Detailed_description 280 284 good +R6 MODIFY Arg1:T21 Arg2:T16 +R7 MODIFY Arg1:T18 Arg2:E9 +R8 BEFORE Arg1:E9 Arg2:E8 +T22 Lab_value 438 446 6/7.5 N6 +T23 Coreference 413 415 it +E10 Coreference:T23 +R9 IDENTICAL Arg1:E10 Arg2:E11 +R10 MODIFY Arg1:T22 Arg2:E10 +R11 BEFORE Arg1:E8 Arg2:E10 +T24 Sign_symptom 265 271 vision +E11 Sign_symptom:T24 +R12 MODIFY Arg1:T16 Arg2:E11 +T25 Detailed_description 358 369 deteriorate +R13 MODIFY Arg1:T25 Arg2:E11 +A2 TREND E11 DEC +* OVERLAP E11 E8 E2 +R14 AFTER Arg1:E11 Arg2:E9 +A3 TREND E10 INC +T26 Biological_structure 452 461 right eye +T27 Biological_structure 463 465 RE +R15 IDENTICAL Arg1:T27 Arg2:T26 +T28 Disease_disorder 483 492 amblyopic +E12 Disease_disorder:T28 +T29 Lab_value 517 525 6/18 N12 +T30 Diagnostic_procedure 500 513 visual acuity +E13 Diagnostic_procedure:T30 +R16 MODIFY Arg1:T29 Arg2:E13 +R17 MODIFY Arg1:E12 Arg2:T27 +R18 MODIFY Arg1:E13 Arg2:T27 +T31 Disease_disorder 617 629 hypertension +E14 Disease_disorder:T31 +T32 Disease_disorder 631 652 hypercholesterolaemia +E15 Disease_disorder:T32 +T33 Lab_value 654 667 50 pack-years +T34 History 671 678 smoking +T35 Disease_disorder 683 698 type 2 diabetes +E16 Disease_disorder:T35 +T36 Disease_disorder 707 727 diabetic retinopathy +E17 Disease_disorder:T36 +A4 POLARITY E17 NEG +T37 History 617 629 hypertension +T38 History 631 652 hypercholesterolaemia +T39 Disease_disorder 595 607 vasculopathy +E18 Disease_disorder:T39 +T40 Detailed_description 586 594 systemic +R19 MODIFY Arg1:T40 Arg2:E18 +T41 Sign_symptom 569 581 risk factors +E19 Sign_symptom:T41 +R20 BEFORE Arg1:E18 Arg2:E19 +T42 History 569 581 risk factors +A5 POLARITY E18 UNCERTAIN +R21 MODIFY Arg1:E14 Arg2:E19 +R22 MODIFY Arg1:E15 Arg2:E19 +R23 MODIFY Arg1:T33 Arg2:T34 +R24 MODIFY Arg1:T34 Arg2:E19 +R25 MODIFY Arg1:E16 Arg2:E19 +R26 MODIFY Arg1:E17 Arg2:E19 +T43 Sign_symptom 773 794 new systemic symptoms +E20 Sign_symptom:T43 +A6 POLARITY E20 NEG +T44 Sign_symptom 829 837 lethargy +E21 Sign_symptom:T44 +T45 Lab_value 819 828 increased +R27 MODIFY Arg1:T45 Arg2:E21 +* OVERLAP E20 E21 E22 E13 +T46 Nonbiological_location 863 866 HES +T47 Diagnostic_procedure 839 859 Clinical examination +E22 Diagnostic_procedure:T47 +R28 MODIFY Arg1:T46 Arg2:E22 +T48 Diagnostic_procedure 895 913 cupped optic discs +E23 Diagnostic_procedure:T48 +T49 Detailed_description 876 894 advanced bilateral +R29 MODIFY Arg1:T49 Arg2:E23 +R30 SUB_PROCEDURE Arg1:E23 Arg2:E22 +T50 Diagnostic_procedure 921 938 cup-to-disc ratio +E24 Diagnostic_procedure:T50 +R31 SUB_PROCEDURE Arg1:E24 Arg2:E23 +T51 Lab_value 945 948 0.9 +T52 Lab_value 950 953 90% +T53 Lab_value 964 967 0.8 +T54 Lab_value 969 972 80% +R32 IDENTICAL Arg1:T54 Arg2:T53 +R33 IDENTICAL Arg1:T52 Arg2:T51 +T55 Subject 1030 1041 optometrist +R34 MODIFY Arg1:T51 Arg2:E24 +R36 MODIFY Arg1:T53 Arg2:E24 +T57 Detailed_description 939 944 right +R37 MODIFY Arg1:T57 Arg2:T51 +T56 Detailed_description 959 963 left +R35 MODIFY Arg1:T56 Arg2:T53 +T58 Detailed_description 1020 1029 referring +R38 MODIFY Arg1:T58 Arg2:T55 +T59 Diagnostic_procedure 1097 1101 IOPs +E25 Diagnostic_procedure:T59 +T60 Diagnostic_procedure 1079 1092 eye movements +E26 Diagnostic_procedure:T60 +T61 Lab_value 1072 1078 normal +R39 MODIFY Arg1:T61 Arg2:E26 +T62 Age 1105 1114 mid-teens +R40 MODIFY Arg1:T62 Arg2:E25 +R41 MODIFY Arg1:T62 Arg2:E26 +T63 Diagnostic_procedure 1131 1153 Computerised perimetry +E27 Diagnostic_procedure:T63 +T64 Diagnostic_procedure 1173 1186 visual fields +E28 Diagnostic_procedure:T64 +T65 Detailed_description 1161 1172 constricted +R42 MODIFY Arg1:T65 Arg2:E28 +R43 SUB_PROCEDURE Arg1:E28 Arg2:E27 +T66 Biological_structure 1195 1199 eyes +T67 Lab_value 1190 1194 both +R44 MODIFY Arg1:T67 Arg2:T66 +R45 MODIFY Arg1:T66 Arg2:E28 +T68 Lab_value 1260 1276 in excess of 30% +T69 Lab_value 1213 1232 considerably raised +T70 Diagnostic_procedure 1233 1259 false-negative error rates +E29 Diagnostic_procedure:T70 +R46 MODIFY Arg1:T69 Arg2:E29 +R47 MODIFY Arg1:T68 Arg2:E29 +R48 SUB_PROCEDURE Arg1:E29 Arg2:E28 +T71 Diagnostic_procedure 1045 1070 equal and reactive pupils +E30 Diagnostic_procedure:T71 +T72 Diagnostic_procedure 1002 1010 findings +E31 Diagnostic_procedure:T72 +R49 MODIFY Arg1:T55 Arg2:E31 +R50 SUB_PROCEDURE Arg1:E30 Arg2:E31 +R51 SUB_PROCEDURE Arg1:E26 Arg2:E31 +R52 SUB_PROCEDURE Arg1:E25 Arg2:E31 +R53 MODIFY Arg1:T62 Arg2:E30 +T73 History 1097 1101 IOPs +T74 History 1072 1092 normal eye movements +T75 History 1045 1070 equal and reactive pupils +T76 History 1002 1010 findings +T77 History 683 698 type 2 diabetes +T78 History 707 727 diabetic retinopathy +T79 Biological_structure 1412 1414 RE +T80 Disease_disorder 1402 1411 amblyopic +E32 Disease_disorder:T80 +R54 MODIFY Arg1:E32 Arg2:T79 +T81 Diagnostic_procedure 1420 1430 field test +E33 Diagnostic_procedure:T81 +T82 Date 1444 1457 4 weeks later +E34 Date:T82 +* OVERLAP E33 E34 E35 +T83 Detailed_description 1458 1478 with similar results +R55 MODIFY Arg1:T83 Arg2:E33 +T84 Biological_structure 1567 1569 LE +T85 Detailed_description 1561 1565 good +R56 MODIFY Arg1:T85 Arg2:T84 +T86 Lab_value 1531 1552 further deterioration +R57 MODIFY Arg1:T86 Arg2:T84 +T87 Clinical_event 1500 1505 visit +E35 Clinical_event:T87 +R58 MODIFY Arg1:T84 Arg2:E35 +T88 Diagnostic_procedure 1571 1586 Visual acuities +E36 Diagnostic_procedure:T88 +T89 Lab_value 1596 1600;1628 1631 6/24 N36 +T90 Detailed_description 1602 1626 loss of one Snellen line +R59 MODIFY Arg1:T89 Arg2:E36 +R60 MODIFY Arg1:T90 Arg2:T89 +T91 Biological_structure 1649 1651 RE +T92 Disease_disorder 1639 1648 amblyopic +E37 Disease_disorder:T92 +R61 MODIFY Arg1:E37 Arg2:T91 +T93 Lab_value 1657 1661;1690 1693 6/18 N36 +T94 Detailed_description 1663 1688 loss of two Snellen lines +R62 MODIFY Arg1:T93 Arg2:E36 +R63 MODIFY Arg1:T94 Arg2:T93 +T95 Biological_structure 1701 1703 LE +R64 MODIFY Arg1:T91 Arg2:T89 +R65 MODIFY Arg1:T95 Arg2:T93 +T96 Diagnostic_procedure 1737 1750 colour vision +E38 Diagnostic_procedure:T96 +T97 Lab_value 1727 1736 depressed +R66 MODIFY Arg1:T97 Arg2:E38 +R67 SUB_PROCEDURE Arg1:E38 Arg2:E36 +T98 Diagnostic_procedure 1762 1766 scan +E39 Diagnostic_procedure:T98 +T99 Detailed_description 1755 1761 urgent +R68 MODIFY Arg1:T99 Arg2:E39 +T100 Biological_structure 1784 1788 head +T101 Biological_structure 1793 1798 orbit +R69 MODIFY Arg1:T100 Arg2:E39 +R70 MODIFY Arg1:T101 Arg2:E39 +T102 Disease_disorder 1839 1845 lesion +E40 Disease_disorder:T102 +A7 POLARITY E40 MAYBE_NEG +T103 Detailed_description 1827 1838 compressive +R71 MODIFY Arg1:T103 Arg2:E40 +T104 Diagnostic_procedure 1850 1864 blood analysis +E41 Diagnostic_procedure:T104 +T105 Disease_disorder 1911 1927 optic neuropathy +E42 Disease_disorder:T105 +T106 Diagnostic_procedure 1938 1949 vitamin B12 +E43 Diagnostic_procedure:T106 +T107 Diagnostic_procedure 1951 1964 folate levels +E44 Diagnostic_procedure:T107 +T108 Diagnostic_procedure 1969 1989 inflammatory markers +E45 Diagnostic_procedure:T108 +T109 Diagnostic_procedure 1895 1927 other causes of optic neuropathy +E46 Diagnostic_procedure:T109 +R72 SUB_PROCEDURE Arg1:E43 Arg2:E46 +R73 SUB_PROCEDURE Arg1:E44 Arg2:E46 +R74 SUB_PROCEDURE Arg1:E45 Arg2:E46 +R75 SUB_PROCEDURE Arg1:E46 Arg2:E41 +T110 Diagnostic_procedure 1991 1994 MRI +E47 Diagnostic_procedure:T110 +T111 Disease_disorder 2012 2016 mass +E48 Disease_disorder:T111 +T112 Biological_attribute 2006 2011 large +R76 MODIFY Arg1:T112 Arg2:E48 +T113 Biological_structure 2032 2047 pituitary fossa +T114 Volume 2072 2093 4.5 cm×5.1 cm× 4.8 cm +R77 MODIFY Arg1:T114 Arg2:E48 +R78 MODIFY Arg1:T113 Arg2:E48 +R79 MODIFY Arg1:E48 Arg2:E47 +T115 Biological_structure 2127 2146 suprasellar cistern +T116 Biological_structure 2151 2179 infrasellar sphenoid sinuses +R80 MODIFY Arg1:T115 Arg2:E48 +R81 MODIFY Arg1:T116 Arg2:E48 +T117 Biological_structure 2185 2197 optic chiasm +T118 Biological_structure 2207 2219 optic nerves +T119 Lab_value 2202 2206 both +R82 MODIFY Arg1:T119 Arg2:T118 +T120 Detailed_description 2225 2245 displaced superiorly +T121 Detailed_description 2250 2274 compressed on both sides +R83 MODIFY Arg1:T120 Arg2:T118 +R84 MODIFY Arg1:T120 Arg2:T117 +R85 MODIFY Arg1:T121 Arg2:T118 +R86 MODIFY Arg1:T121 Arg2:T117 +T122 Disease_disorder 2280 2284 mass +E49 Disease_disorder:T122 +T123 Diagnostic_procedure 2306 2308;2316 2323 T1 signals +E50 Diagnostic_procedure:T123 +T124 Diagnostic_procedure 2313 2323 T2 signals +E51 Diagnostic_procedure:T124 +T125 Diagnostic_procedure 2338 2350 fluid levels +E52 Diagnostic_procedure:T125 +T126 Lab_value 2329 2337 multiple +R87 MODIFY Arg1:T126 Arg2:E52 +T127 Detailed_description 2292 2305 heterogeneous +R88 MODIFY Arg1:T127 Arg2:E50 +R89 MODIFY Arg1:T127 Arg2:E51 +R90 MODIFY Arg1:E51 Arg2:E49 +R91 MODIFY Arg1:E50 Arg2:E49 +R92 MODIFY Arg1:E52 Arg2:E49 +T128 Disease_disorder 2379 2390 haemorrhage +E53 Disease_disorder:T128 +T129 History 2379 2390 haemorrhage +T130 Disease_disorder 2428 2442 calcifications +E54 Disease_disorder:T130 +A8 POLARITY E54 MAYBE_POS +T131 Diagnostic_procedure 2395 2416 low-signal components +E55 Diagnostic_procedure:T131 +T132 History 2395 2416 low-signal components +R93 CAUSE Arg1:E53 Arg2:E52 +R94 CAUSE Arg1:E55 Arg2:E52 +R95 MODIFY Arg1:E54 Arg2:E55 +T133 Disease_disorder 2481 2498 craniopharyngioma +E56 Disease_disorder:T133 +T134 Disease_disorder 2515 2532 pituitary adenoma +E57 Disease_disorder:T134 +T135 Nonbiological_location 2575 2592 neurosurgery unit +T136 Clinical_event 2550 2558 referred +E58 Clinical_event:T136 +T137 Diagnostic_procedure 2631 2647 prolactin levels +E59 Diagnostic_procedure:T137 +T138 Lab_value 2651 2677 greater than 200 000 mIU/L +T139 Disease_disorder 2715 2727 prolactinoma +E60 Disease_disorder:T139 +T140 Severity 2709 2714 giant +R96 MODIFY Arg1:T140 Arg2:E60 +A9 POLARITY E60 POS +R97 MODIFY Arg1:T135 Arg2:E58 +T141 Lab_value 2615 2630 markedly raised +R98 MODIFY Arg1:T141 Arg2:E59 +* OVERLAP E58 E59 E60 +T142 Medication 2800 2811 cabergoline +E61 Medication:T142 +T143 Dosage 2812 2818 500 µg +T144 Medication 2823 2836 dexamethasone +E62 Medication:T144 +T145 Dosage 2837 2841 8 mg +R99 MODIFY Arg1:T145 Arg2:E62 +R100 MODIFY Arg1:T143 Arg2:E61 +T146 Nonbiological_location 2753 2780 local endocrinology service +T147 Date 2843 2856 Within a week +E63 Date:T147 +R101 BEFORE Arg1:E60 Arg2:E61 +* OVERLAP E61 E62 +R102 BEFORE Arg1:E62 Arg2:E63 +T149 Diagnostic_procedure 2909 2935 visual fields and acuities +E65 Diagnostic_procedure:T149 +A11 TREND E65 INC +T150 Lab_value 2939 2943 6/18 +T151 Lab_value 2954 2957 6/9 +T152 Biological_structure 2944 2946 RE +T153 Biological_structure 2958 2960 LE +R103 MODIFY Arg1:T153 Arg2:T151 +R104 MODIFY Arg1:T152 Arg2:T150 +T154 Diagnostic_procedure 2966 2982 prolactin levels +E66 Diagnostic_procedure:T154 +T155 Lab_value 3045 3054 336 mIU/L +R105 MODIFY Arg1:T155 Arg2:E66 +A12 TREND E66 DEC +T156 Date 3056 3074 Three months later +E67 Date:T156 +R106 BEFORE Arg1:E66 Arg2:E67 +T157 Diagnostic_procedure 3079 3092 visual acuity +E68 Diagnostic_procedure:T157 +T158 Biological_structure 3100 3102 RE +T159 Biological_structure 3107 3109 LE +T160 Lab_value 3115 3119 6/18 +T161 Lab_value 3124 3127 6/5 +R107 MODIFY Arg1:T160 Arg2:E68 +R108 MODIFY Arg1:T161 Arg2:E68 +R109 MODIFY Arg1:T159 Arg2:T161 +R110 MODIFY Arg1:T158 Arg2:T160 +T162 Diagnostic_procedure 3147 3171 visual field examination +E69 Diagnostic_procedure:T162 +T163 Detailed_description 3202 3223 almost normal results +T164 Detailed_description 3179 3196 striking recovery +R111 MODIFY Arg1:T164 Arg2:E69 +R112 MODIFY Arg1:T163 Arg2:E69 +* OVERLAP E67 E68 E69 +T148 Lab_value 2871 2891 dramatic improvement +R113 MODIFY Arg1:T148 Arg2:E65 +R114 MODIFY Arg1:T150 Arg2:E65 +R115 MODIFY Arg1:T151 Arg2:E65 +* OVERLAP E63 E65 E66 +T165 Lab_value 3000 3041 dramatic response with levels coming down +R116 MODIFY Arg1:T165 Arg2:E66 +A10 POLARITY E56 MAYBE_POS +A13 POLARITY E57 MAYBE_POS +T166 Detailed_description 2502 2514 haemorrhagic +R117 MODIFY Arg1:T166 Arg2:E57 +T167 Sign_symptom 1325 1338 concentration +E64 Sign_symptom:T167 +T168 Sign_symptom 1343 1357 attention span +E70 Sign_symptom:T168 +T169 Severity 1320 1324 poor +R118 MODIFY Arg1:T169 Arg2:E64 +R119 MODIFY Arg1:T169 Arg2:E70 +* OVERLAP E64 E70 +T170 Detailed_description 1358 1381 with testing compounded +T171 Coreference 1296 1300 this +E71 Coreference:T171 +R120 IDENTICAL Arg1:E71 Arg2:E29 +R121 MODIFY Arg1:T3 Arg2:E1 +R122 MODIFY Arg1:T5 Arg2:E1 +R123 CAUSE Arg1:E64 Arg2:E71 +R124 CAUSE Arg1:E70 Arg2:E71 +R125 MODIFY Arg1:T170 Arg2:E71 +R126 MODIFY Arg1:T79 Arg2:E71 +R127 BEFORE Arg1:E70 Arg2:E33 +* OVERLAP E38 E39 +R128 MODIFY Arg1:E40 Arg2:E39 +* OVERLAP E40 E41 +* OVERLAP E45 E47 E49 +T172 Coreference 2444 2458 The appearance +E72 Coreference:T172 +R129 IDENTICAL Arg1:E72 Arg2:E49 +R130 MODIFY Arg1:E56 Arg2:E72 +R131 MODIFY Arg1:E57 Arg2:E72 +* OVERLAP E54 E72 +R132 BEFORE Arg1:E57 Arg2:E58 +* OVERLAP E24 E27 +R133 MODIFY Arg1:E3 Arg2:E2 +R134 MODIFY Arg1:E7 Arg2:E2 +R135 MODIFY Arg1:E4 Arg2:E2 +R136 MODIFY Arg1:E6 Arg2:E2 +R137 AFTER Arg1:E1 Arg2:E2