--- a +++ b/processing/MACCROBAT/25246819.ann @@ -0,0 +1,407 @@ +T1 Age 2 13 19-year-old +T2 Sex 14 19 woman +T3 Sign_symptom 37 41 lump +E1 Sign_symptom:T3 +T4 Biological_structure 49 61 right breast +R1 MODIFY Arg1:T4 Arg2:E1 +T5 Disease_disorder 71 83 macrocephaly +E2 Disease_disorder:T5 +T6 Sign_symptom 99 106 papules +E3 Sign_symptom:T6 +T7 Biological_attribute 88 98 milimetric +T8 Biological_structure 114 120 tongue +R2 MODIFY Arg1:T7 Arg2:E3 +R3 MODIFY Arg1:T8 Arg2:E3 +T9 Texture 130 142 cobble stone +R4 MODIFY Arg1:T9 Arg2:E3 +T10 Biological_structure 159 165 breast +T11 Diagnostic_procedure 166 181 ultrasonography +E4 Diagnostic_procedure:T11 +T12 Diagnostic_procedure 183 185 US +E5 Diagnostic_procedure:T12 +R5 IDENTICAL Arg1:E5 Arg2:E4 +R6 MODIFY Arg1:T10 Arg2:E4 +T13 Lab_value 194 210 more than twenty +T14 Disease_disorder 231 237 masses +E6 Disease_disorder:T14 +T15 Shape 226 230 oval +T16 Detailed_description 211 224 circumscribed +R7 MODIFY Arg1:T16 Arg2:E6 +R8 MODIFY Arg1:T15 Arg2:E6 +R9 MODIFY Arg1:T13 Arg2:E6 +T17 Biological_structure 246 252 breast +R10 MODIFY Arg1:T17 Arg2:E6 +T18 Diagnostic_procedure 272 278 biopsy +E7 Diagnostic_procedure:T18 +T19 Detailed_description 257 271 US-guided core +R11 MODIFY Arg1:T19 Arg2:E7 +T20 Disease_disorder 310 316 masses +E8 Disease_disorder:T20 +T21 Detailed_description 301 309 palpable +T22 Disease_disorder 350 363 fibroadenomas +E9 Disease_disorder:T22 +T23 Detailed_description 341 349 juvenile +R12 MODIFY Arg1:T23 Arg2:E9 +A1 POLARITY E9 POS +R13 MODIFY Arg1:T21 Arg2:E8 +T24 Diagnostic_procedure 392 394 US +E10 Diagnostic_procedure:T24 +T25 Biological_structure 385 391 breast +R14 MODIFY Arg1:T25 Arg2:E10 +T26 Frequency 417 437 every 6 or 12 months +T27 Duration 442 449 3 years +E11 Duration:T27 +R16 MODIFY Arg1:T26 Arg2:E10 +R17 MODIFY Arg1:E11 Arg2:E10 +R18 BEFORE Arg1:E7 Arg2:E10 +R19 MODIFY Arg1:E6 Arg2:E5 +* OVERLAP E6 E7 +R20 MODIFY Arg1:E8 Arg2:E7 +R21 MODIFY Arg1:E9 Arg2:E7 +T29 Diagnostic_procedure 488 496 biopsies +E13 Diagnostic_procedure:T29 +T30 Detailed_description 483 487 core +R22 MODIFY Arg1:T30 Arg2:E13 +T31 Quantitative_concept 512 521 six times +T32 Diagnostic_procedure 566 582 needle excisions +E14 Diagnostic_procedure:T32 +T33 Diagnostic_procedure 586 604 surgical excisions +E15 Diagnostic_procedure:T33 +T34 Detailed_description 535 544 US-guided +T35 Detailed_description 545 560 vacuum-assisted +T36 Detailed_description 561 565 core +R23 MODIFY Arg1:T34 Arg2:E14 +R24 MODIFY Arg1:T35 Arg2:E14 +R25 MODIFY Arg1:T36 Arg2:E14 +R26 MODIFY Arg1:T34 Arg2:E15 +R27 MODIFY Arg1:T35 Arg2:E15 +R28 MODIFY Arg1:T36 Arg2:E15 +T37 Disease_disorder 608 615 lesions +E16 Disease_disorder:T37 +T38 Lab_value 621 636 increased sizes +R29 MODIFY Arg1:T38 Arg2:E16 +R30 BEFORE Arg1:E13 Arg2:E14 +T39 Disease_disorder 662 674 fibroadenoma +E17 Disease_disorder:T39 +T40 Disease_disorder 676 691 tubular adenoma +E18 Disease_disorder:T40 +T42 Disease_disorder 695 722 atypical ductal hyperplasia +E19 Disease_disorder:T42 +T43 Disease_disorder 724 727 ADH +E20 Disease_disorder:T43 +R32 IDENTICAL Arg1:E20 Arg2:E19 +T45 Age 760 775 age of 19 years +T46 Biological_structure 801 805 neck +T47 Diagnostic_procedure 806 808 US +E21 Diagnostic_procedure:T47 +T48 Disease_disorder 824 828 mass +E22 Disease_disorder:T48 +T49 Biological_structure 836 845 left neck +T50 Detailed_description 815 823 palpable +R34 MODIFY Arg1:T50 Arg2:E22 +R35 MODIFY Arg1:T49 Arg2:E22 +R36 MODIFY Arg1:T46 Arg2:E21 +R37 MODIFY Arg1:E22 Arg2:E21 +T51 Sign_symptom 869 876 nodules +E23 Sign_symptom:T51 +T52 Detailed_description 855 868 indeterminate +R38 MODIFY Arg1:T52 Arg2:E23 +T53 Biological_structure 899 913 thyroid glands +T54 Lab_value 894 898 both +R39 MODIFY Arg1:T54 Arg2:T53 +R40 MODIFY Arg1:T53 Arg2:E23 +T55 Diagnostic_procedure 927 929 US +E24 Diagnostic_procedure:T55 +T56 Detailed_description 917 926 follow-up +R41 MODIFY Arg1:T56 Arg2:E24 +T28 Lab_value 966 983 increased in size +T57 Lab_value 944 948 some +T58 Sign_symptom 958 965 nodules +E12 Sign_symptom:T58 +R15 MODIFY Arg1:T28 Arg2:E12 +R42 MODIFY Arg1:T57 Arg2:E12 +R43 BEFORE Arg1:E12 Arg2:E24 +T59 Therapeutic_procedure 1015 1028 thyroidectomy +E25 Therapeutic_procedure:T59 +T60 Detailed_description 1009 1014 total +R44 MODIFY Arg1:T60 Arg2:E25 +T61 Disease_disorder 1076 1096 follicular carcinoma +E26 Disease_disorder:T61 +T62 Detailed_description 1067 1075 invasive +R45 MODIFY Arg1:T62 Arg2:E26 +T63 Biological_structure 1104 1116 left thyroid +R46 MODIFY Arg1:T63 Arg2:E26 +T64 Disease_disorder 1121 1139 follicular adenoma +E27 Disease_disorder:T64 +T41 Biological_structure 1147 1160 right thyroid +R31 MODIFY Arg1:T41 Arg2:E27 +T66 Nonbiological_location 1211 1219 hospital +T67 Biological_structure 1245 1255 left cheek +T68 Sign_symptom 1229 1237 swelling +E28 Sign_symptom:T68 +R47 MODIFY Arg1:T67 Arg2:E28 +T69 Clinical_event 1199 1206 visited +E29 Clinical_event:T69 +T70 Diagnostic_procedure 1271 1278 CT scan +E30 Diagnostic_procedure:T70 +T71 Biological_structure 1257 1261 Head +T72 Biological_structure 1266 1270 neck +R48 MODIFY Arg1:T71 Arg2:E30 +R49 MODIFY Arg1:T72 Arg2:E30 +T73 Disease_disorder 1299 1303 mass +E31 Disease_disorder:T73 +T74 Biological_structure 1290 1298 vascular +R50 MODIFY Arg1:T74 Arg2:E31 +T75 Biological_structure 1311 1329 left parotid gland +R51 MODIFY Arg1:T75 Arg2:E31 +T76 Biological_structure 1348 1361 left forehead +R52 MODIFY Arg1:T76 Arg2:E31 +T77 Diagnostic_procedure 1383 1394 angiography +E32 Diagnostic_procedure:T77 +T78 Biological_structure 1366 1382 external carotid +R53 MODIFY Arg1:T78 Arg2:E32 +T79 Biological_structure 1465 1495 left internal maxillary artery +T81 Therapeutic_procedure 1626 1644 genetic counseling +E34 Therapeutic_procedure:T81 +T82 Disease_disorder 1671 1686 Cowden syndrome +E35 Disease_disorder:T82 +A2 POLARITY E35 UNCERTAIN +T83 Diagnostic_procedure 1695 1699 PTEN +E36 Diagnostic_procedure:T83 +A3 POLARITY E36 UNCERTAIN +T84 Diagnostic_procedure 1727 1739 blood sample +E37 Diagnostic_procedure:T84 +T85 Diagnostic_procedure 1700 1719 DNA sequencing test +E38 Diagnostic_procedure:T85 +R54 SUB_PROCEDURE Arg1:E37 Arg2:E38 +R55 MODIFY Arg1:E35 Arg2:E38 +R56 SUB_PROCEDURE Arg1:E36 Arg2:E38 +T86 Diagnostic_procedure 1772 1781 c.301dupA +E39 Diagnostic_procedure:T86 +T87 Diagnostic_procedure 1783 1794 p.I101NfsX6 +E40 Diagnostic_procedure:T87 +T88 Diagnostic_procedure 1751 1770 frameshift mutation +E41 Diagnostic_procedure:T88 +R57 IDENTICAL Arg1:E40 Arg2:E39 +R58 MODIFY Arg1:E39 Arg2:E41 +T90 Disease_disorder 1850 1854 mass +E42 Disease_disorder:T90 +T91 Lab_value 1860 1874 increased size +T92 Biological_structure 1908 1919 left breast +T93 Lab_value 1879 1900 increased vascularity +R59 MODIFY Arg1:T91 Arg2:E42 +R60 MODIFY Arg1:T93 Arg2:E42 +R61 MODIFY Arg1:T92 Arg2:E42 +T94 Diagnostic_procedure 1955 1970 needle excision +E43 Diagnostic_procedure:T94 +T95 Detailed_description 1924 1933 US-guided +T96 Detailed_description 1934 1949 vacuum-assisted +T97 Detailed_description 1950 1954 core +R62 MODIFY Arg1:T95 Arg2:E43 +R63 MODIFY Arg1:T96 Arg2:E43 +R64 MODIFY Arg1:T97 Arg2:E43 +T98 Disease_disorder 1982 2006 ductal carcinoma in situ +E44 Disease_disorder:T98 +T99 Disease_disorder 2008 2012 DCIS +E45 Disease_disorder:T99 +R65 IDENTICAL Arg1:E45 Arg2:E44 +T100 Detailed_description 2017 2032 non-comedo type +T101 Lab_value 2039 2048 low grade +R66 MODIFY Arg1:T100 Arg2:E45 +T102 Disease_disorder 2059 2071 fibroadenoma +E46 Disease_disorder:T102 +R67 MODIFY Arg1:T101 Arg2:E46 +* OVERLAP E45 E46 E47 +R68 MODIFY Arg1:E44 Arg2:E43 +R69 MODIFY Arg1:E46 Arg2:E43 +T103 Diagnostic_procedure 2111 2114 MRI +E47 Diagnostic_procedure:T103 +T104 Detailed_description 2086 2103 contrast-enhanced +T105 Biological_structure 2104 2110 breast +R70 MODIFY Arg1:T105 Arg2:E47 +R71 MODIFY Arg1:T104 Arg2:E47 +T106 Lab_value 2160 2168 multiple +T107 Detailed_description 2170 2188 well-circumscribed +T108 Disease_disorder 2200 2206 masses +E48 Disease_disorder:T108 +T109 Biological_structure 2215 2222 breasts +T110 Lab_value 2210 2214 both +R72 MODIFY Arg1:T110 Arg2:T109 +R73 MODIFY Arg1:T109 Arg2:E48 +R74 MODIFY Arg1:T107 Arg2:E48 +R75 MODIFY Arg1:T106 Arg2:E48 +T111 Lab_value 2190 2199 enhancing +R76 MODIFY Arg1:T111 Arg2:E48 +T112 Disease_disorder 2237 2243 masses +E49 Disease_disorder:T112 +T113 Lab_value 2233 2236 All +R77 MODIFY Arg1:T113 Arg2:E49 +T114 Diagnostic_procedure 2272 2288 signal intensity +E50 Diagnostic_procedure:T114 +T115 Diagnostic_procedure 2292 2310 T2-weighted images +E51 Diagnostic_procedure:T115 +T116 Severity 2251 2255 high +T117 Severity 2259 2271 intermediate +R78 SUB_PROCEDURE Arg1:E50 Arg2:E51 +R79 MODIFY Arg1:E49 Arg2:E50 +R80 MODIFY Arg1:T116 Arg2:E50 +R81 MODIFY Arg1:T117 Arg2:E50 +T118 Disease_disorder 2329 2335 masses +E52 Disease_disorder:T118 +T119 Lab_value 2321 2328 Several +R82 MODIFY Arg1:T119 Arg2:E52 +T120 Detailed_description 2346 2369 early rapid enhancement +T121 Disease_disorder 2476 2486 malignancy +E53 Disease_disorder:T121 +A4 POLARITY E53 MAYBE_POS +T122 Therapeutic_procedure 2522 2532 mastectomy +E54 Therapeutic_procedure:T122 +T123 Detailed_description 2499 2521 bilateral prophylactic +R83 MODIFY Arg1:T123 Arg2:E54 +T124 Therapeutic_procedure 2548 2569 breast reconstruction +E55 Therapeutic_procedure:T124 +T125 Detailed_description 2538 2547 immediate +R84 MODIFY Arg1:T125 Arg2:E55 +R85 SUB_PROCEDURE Arg1:E55 Arg2:E54 +T126 Disease_disorder 2621 2627 masses +E56 Disease_disorder:T126 +T127 Biological_structure 2614 2620 breast +T128 Lab_value 2595 2603 multiple +T129 Detailed_description 2604 2613 bilateral +R86 MODIFY Arg1:T127 Arg2:E56 +R87 MODIFY Arg1:T129 Arg2:E56 +R88 MODIFY Arg1:T128 Arg2:E56 +T130 Diagnostic_procedure 2644 2660 kinetic features +E57 Diagnostic_procedure:T130 +T131 Detailed_description 2633 2643 suspicious +R89 MODIFY Arg1:T131 Arg2:E57 +T132 Diagnostic_procedure 2671 2674 MRI +E58 Diagnostic_procedure:T132 +T133 Biological_structure 2664 2670 breast +R90 MODIFY Arg1:T133 Arg2:E58 +R91 SUB_PROCEDURE Arg1:E58 Arg2:E57 +T134 Disease_disorder 2695 2708 breast cancer +E59 Disease_disorder:T134 +A5 POLARITY E59 MAYBE_POS +T135 Disease_disorder 2712 2727 Cowden syndrome +E60 Disease_disorder:T135 +R92 MODIFY Arg1:E60 Arg2:E59 +T136 Disease_disorder 2766 2769 ADH +E61 Disease_disorder:T136 +T137 Disease_disorder 2780 2795 tubular adenoma +E62 Disease_disorder:T137 +T138 Disease_disorder 2968 2981 breast cancer +E63 Disease_disorder:T138 +A6 POLARITY E63 NEG +T139 Family_history 2968 2981 breast cancer +T140 Disease_disorder 2985 3000 Cowden syndrome +E64 Disease_disorder:T140 +A7 POLARITY E64 NEG +T141 Family_history 2985 3000 Cowden syndrome +T142 Biological_structure 2830 2841 left breast +T143 Disease_disorder 2813 2822 carcinoma +E65 Disease_disorder:T143 +A8 POLARITY E65 NEG +T144 Detailed_description 2804 2812 residual +R93 MODIFY Arg1:T144 Arg2:E65 +R94 MODIFY Arg1:E62 Arg2:E61 +R95 MODIFY Arg1:E65 Arg2:E61 +R96 MODIFY Arg1:T142 Arg2:E65 +T145 Disease_disorder 2855 2871 tubular adenomas +E66 Disease_disorder:T145 +T146 Lab_value 2846 2854 multiple +R97 MODIFY Arg1:T146 Arg2:E66 +T147 Disease_disorder 2873 2886 fibroadenomas +E67 Disease_disorder:T147 +R98 MODIFY Arg1:T146 Arg2:E67 +T148 Disease_disorder 2891 2913 intraductal papillomas +E68 Disease_disorder:T148 +T149 Biological_structure 2922 2929 breasts +T150 Lab_value 2917 2921 both +R99 MODIFY Arg1:T150 Arg2:T149 +R100 MODIFY Arg1:T146 Arg2:E68 +R101 MODIFY Arg1:T149 Arg2:E68 +R102 MODIFY Arg1:T149 Arg2:E67 +R103 MODIFY Arg1:T149 Arg2:E66 +* OVERLAP E66 E67 E68 E65 +T151 Diagnostic_procedure 2733 2756 surgical histopathology +E69 Diagnostic_procedure:T151 +R104 MODIFY Arg1:E61 Arg2:E69 +* OVERLAP E60 E69 +* OVERLAP E58 E59 +* OVERLAP E55 E56 +R105 MODIFY Arg1:E57 Arg2:E56 +R106 MODIFY Arg1:T120 Arg2:E52 +T152 Diagnostic_procedure 2375 2398 washout kinetic pattern +E70 Diagnostic_procedure:T152 +T153 Diagnostic_procedure 2402 2440 time-signal intensity curve evaluation +E71 Diagnostic_procedure:T153 +R107 MODIFY Arg1:E53 Arg2:E70 +R108 SUB_PROCEDURE Arg1:E71 Arg2:E70 +R109 MODIFY Arg1:E70 Arg2:E52 +* OVERLAP E53 E54 +* OVERLAP E51 E52 +* OVERLAP E48 E49 +R110 MODIFY Arg1:E48 Arg2:E47 +* OVERLAP E42 E43 E72 +R111 BEFORE Arg1:E40 Arg2:E72 +T154 Date 1797 1819 At the age of 22 years +E72 Date:T154 +R112 SUB_PROCEDURE Arg1:E41 Arg2:E37 +* OVERLAP E34 E38 E75 +T80 Disease_disorder 1425 1428 AVM +E33 Disease_disorder:T80 +T155 Disease_disorder 1566 1569 AVM +E73 Disease_disorder:T155 +R113 MODIFY Arg1:E33 Arg2:E32 +T156 Biological_structure 1434 1447 feeder vessel +R114 MODIFY Arg1:T79 Arg2:T156 +R115 MODIFY Arg1:T156 Arg2:E33 +T157 Therapeutic_procedure 1516 1528 embolization +E74 Therapeutic_procedure:T157 +T158 Detailed_description 1508 1515 partial +R116 MODIFY Arg1:T158 Arg2:E74 +T159 Coreference 1583 1604 the patient's symptom +E75 Coreference:T159 +R117 IDENTICAL Arg1:E75 Arg2:E28 +A9 POLARITY E75 NEG +A10 TREND E75 DEC +T160 Diagnostic_procedure 1543 1553 blood flow +E76 Diagnostic_procedure:T160 +T161 Lab_value 1529 1538 decreased +A11 TREND E76 DEC +R119 MODIFY Arg1:T161 Arg2:E76 +R120 CAUSE Arg1:E74 Arg2:E76 +R118 MODIFY Arg1:E73 Arg2:E76 +R121 CAUSE Arg1:E76 Arg2:E75 +T162 Date 1171 1193 At the age of 21 years +E77 Date:T162 +* OVERLAP E77 E29 E28 E30 +R122 MODIFY Arg1:T66 Arg2:E29 +R123 MODIFY Arg1:E31 Arg2:E30 +* OVERLAP E31 E32 +R124 BEFORE Arg1:E33 Arg2:E74 +R125 BEFORE Arg1:E25 Arg2:E26 +* OVERLAP E26 E27 +R126 BEFORE Arg1:E27 Arg2:E77 +* OVERLAP E12 E25 +R127 BEFORE Arg1:E23 Arg2:E24 +T163 Date 753 775 At the age of 19 years +E78 Date:T163 +* OVERLAP E78 E21 +* OVERLAP E22 E23 +T44 Disease_disorder 739 751 fibroadenoma +E79 Disease_disorder:T44 +R33 MODIFY Arg1:E79 Arg2:E20 +R128 MODIFY Arg1:E16 Arg2:E15 +R129 MODIFY Arg1:E16 Arg2:E14 +* OVERLAP E10 E13 +R130 MODIFY Arg1:T31 Arg2:E13 +T164 Coreference 638 656 Pathologic results +E80 Coreference:T164 +R131 IDENTICAL Arg1:E80 Arg2:E13 +R132 MODIFY Arg1:E17 Arg2:E80 +R133 MODIFY Arg1:E18 Arg2:E80 +R134 MODIFY Arg1:E19 Arg2:E80 +R135 BEFORE Arg1:E79 Arg2:E78 +* OVERLAP E1 E2 E3 E4