--- a +++ b/processing/MACCROBAT/25155594.ann @@ -0,0 +1,184 @@ +T1 Age 2 13 20-year-old +T2 Sex 14 18 male +T3 History 24 39 cystic fibrosis +T4 Clinical_event 44 55 transferred +E1 Clinical_event:T4 +T5 Nonbiological_location 59 85 Houston Methodist Hospital +R1 MODIFY Arg1:T5 Arg2:E1 +T6 Date 89 101 January 2013 +E2 Date:T6 +T7 Clinical_event 108 117 evaluated +E3 Clinical_event:T7 +T8 Therapeutic_procedure 138 148 transplant +E4 Therapeutic_procedure:T8 +T9 Biological_structure 131 137 kidney +T10 Biological_structure 122 126 lung +T11 Disease_disorder 327 351 pancreatic insufficiency +E5 Disease_disorder:T11 +T12 Sign_symptom 327 351 pancreatic insufficiency +E6 Sign_symptom:T12 +T13 Disease_disorder 483 505 respiratory infections +E7 Disease_disorder:T13 +T14 Medication 973 982 meropenem +E8 Medication:T14 +R2 MODIFY Arg1:T10 Arg2:E4 +R3 MODIFY Arg1:T9 Arg2:E4 +T15 History 327 351 pancreatic insufficiency +T16 Therapeutic_procedure 359 374 transplantation +E9 Therapeutic_procedure:T16 +T17 Biological_structure 353 358 liver +R4 MODIFY Arg1:T17 Arg2:E9 +T18 Date 378 382 2004 +E10 Date:T18 +T19 History 353 382 liver transplantation in 2004 +T20 Disease_disorder 400 408 diabetes +E11 Disease_disorder:T20 +T21 Medication 384 391 steroid +E12 Medication:T21 +R5 CAUSE Arg1:E12 Arg2:E11 +T22 History 384 408 steroid-induced diabetes +T23 Disease_disorder 410 433 end-stage renal disease +E13 Disease_disorder:T23 +T24 History 410 433 end-stage renal disease +T25 Disease_disorder 439 456 testicular cancer +E14 Disease_disorder:T25 +T26 History 439 456 testicular cancer +T27 History 483 563 respiratory infections with several multidrug-resistant bacteria, including MRSA +T28 Disease_disorder 559 563 MRSA +E15 Disease_disorder:T28 +T29 Disease_disorder 519 547 multidrug-resistant bacteria +E16 Disease_disorder:T29 +R6 CAUSE Arg1:E16 Arg2:E7 +R7 CAUSE Arg1:E15 Arg2:E7 +T30 Medication 585 596 ceftaroline +E17 Medication:T30 +T31 Nonbiological_location 603 619 outside hospital +R8 MODIFY Arg1:T31 Arg2:E17 +T32 Clinical_event 641 649 transfer +E18 Clinical_event:T32 +T33 Nonbiological_location 653 679 Houston Methodist Hospital +R9 MODIFY Arg1:T33 Arg2:E18 +T34 Clinical_event 710 722 hospitalized +E19 Clinical_event:T34 +T35 Frequency 697 709 periodically +R10 MODIFY Arg1:T35 Arg2:E19 +T36 Duration 728 748 January to July 2013 +E20 Duration:T36 +T37 Disease_disorder 812 822 infections +E21 Disease_disorder:T37 +T38 Detailed_description 795 811 catheter-related +T39 Biological_structure 779 790 respiratory +R11 MODIFY Arg1:T38 Arg2:E21 +R12 MODIFY Arg1:T39 Arg2:E21 +T40 Disease_disorder 833 837 MRSA +E22 Disease_disorder:T40 +R13 CAUSE Arg1:E22 Arg2:E21 +T41 Disease_disorder 842 884 multidrug-resistant Pseudomonas aeruginosa +E23 Disease_disorder:T41 +R14 CAUSE Arg1:E23 Arg2:E21 +T42 Medication 890 900 antibiotic +E24 Medication:T42 +T43 Medication 984 995 ceftazidime +E25 Medication:T43 +T44 Medication 997 1008 doxycycline +E26 Medication:T44 +T45 Medication 1010 1020 vancomycin +E27 Medication:T45 +T46 Medication 1022 1031 linezolid +E28 Medication:T46 +T47 Medication 1033 1041 cefepime +E29 Medication:T47 +T48 Medication 1043 1056 ciprofloxacin +E30 Medication:T48 +T49 Medication 1083 1091 colistin +E31 Medication:T49 +T50 Medication 1096 1106 tobramycin +E32 Medication:T50 +T51 Administration 1062 1069 inhaled +T52 Administration 1074 1082 systemic +R15 MODIFY Arg1:T52 Arg2:E31 +R16 MODIFY Arg1:T52 Arg2:E32 +R17 MODIFY Arg1:T51 Arg2:E31 +R18 MODIFY Arg1:T51 Arg2:E32 +T53 Clinical_event 1128 1138 readmitted +E33 Clinical_event:T53 +T54 Nonbiological_location 1146 1154 hospital +R19 MODIFY Arg1:T54 Arg2:E33 +T55 Date 1158 1167 June 2013 +E34 Date:T55 +T56 Disease_disorder 1169 1173 MRSA +E35 Disease_disorder:T56 +T57 Diagnostic_procedure 1189 1197 cultures +E36 Diagnostic_procedure:T57 +T58 Biological_structure 1201 1206 blood +T59 Biological_structure 1211 1232 respiratory specimens +R20 MODIFY Arg1:T59 Arg2:E36 +R21 MODIFY Arg1:T58 Arg2:E36 +T60 Coreference 1244 1252 isolates +E37 Coreference:T60 +R22 IDENTICAL Arg1:E37 Arg2:E36 +T61 Diagnostic_procedure 1271 1282 clindamycin +E38 Diagnostic_procedure:T61 +#1 AnnotatorNotes E38 Note that these are diagnostics here because they are being tested for resistance, not being administered to the patient +T62 Diagnostic_procedure 1284 1293 linezolid +E39 Diagnostic_procedure:T62 +T63 Diagnostic_procedure 1295 1304 oxacillin +E40 Diagnostic_procedure:T63 +T64 Diagnostic_procedure 1310 1339 trimethoprim-sulfamethoxazole +E41 Diagnostic_procedure:T64 +T65 Diagnostic_procedure 1386 1396 vancomycin +E42 Diagnostic_procedure:T65 +T66 Diagnostic_procedure 1372 1380 rifampin +E43 Diagnostic_procedure:T66 +T67 Diagnostic_procedure 1359 1370 minocycline +E44 Diagnostic_procedure:T67 +T68 Lab_value 1344 1355 susceptible +R23 MODIFY Arg1:T68 Arg2:E44 +R24 MODIFY Arg1:T68 Arg2:E43 +R25 MODIFY Arg1:T68 Arg2:E42 +T69 Lab_value 1258 1267 resistant +R26 MODIFY Arg1:T69 Arg2:E38 +R27 MODIFY Arg1:T69 Arg2:E39 +R28 MODIFY Arg1:T69 Arg2:E40 +R29 MODIFY Arg1:T69 Arg2:E41 +T70 Diagnostic_procedure 1408 1415 isolate +E45 Diagnostic_procedure:T70 +T71 Biological_structure 1402 1407 blood +R30 MODIFY Arg1:T71 Arg2:E45 +T72 Diagnostic_procedure 1444 1467 ceftaroline Etest strip +E46 Diagnostic_procedure:T72 +T73 Lab_value 1416 1432 grew confluently +T74 Lab_value 1481 1500 MIC of >32 mg/liter +R31 MODIFY Arg1:T73 Arg2:E46 +R32 MODIFY Arg1:T74 Arg2:E46 +R33 SUB_PROCEDURE Arg1:E46 Arg2:E45 +T75 Diagnostic_procedure 1546 1554 isolates +E47 Diagnostic_procedure:T75 +T76 Biological_structure 1528 1545 respiratory tract +R34 MODIFY Arg1:T76 Arg2:E47 +T77 Disease_disorder 1518 1527 S. aureus +E48 Disease_disorder:T77 +R35 MODIFY Arg1:E48 Arg2:E47 +T78 Lab_value 1502 1506 Five +R36 MODIFY Arg1:T78 Arg2:E47 +* OVERLAP E1 E2 E3 +R37 BEFORE Arg1:E3 Arg2:E4 +A1 POLARITY E4 UNCERTAIN +#2 AnnotatorNotes E4 This transplant may not have been done +R38 AFTER Arg1:E4 Arg2:E5 +* OVERLAP E5 E6 E9 E10 E12 E11 E13 E14 E7 E16 E15 +R39 BEFORE Arg1:E15 Arg2:E17 +R40 BEFORE Arg1:E17 Arg2:E18 +R41 BEFORE Arg1:E18 Arg2:E19 +* OVERLAP E19 E20 E21 E22 E23 E24 +R42 SUB_PROCEDURE Arg1:E8 Arg2:E24 +R43 SUB_PROCEDURE Arg1:E25 Arg2:E24 +R44 SUB_PROCEDURE Arg1:E26 Arg2:E24 +R45 SUB_PROCEDURE Arg1:E27 Arg2:E24 +R46 SUB_PROCEDURE Arg1:E28 Arg2:E24 +R47 SUB_PROCEDURE Arg1:E29 Arg2:E24 +R48 SUB_PROCEDURE Arg1:E30 Arg2:E24 +R49 SUB_PROCEDURE Arg1:E31 Arg2:E24 +R50 SUB_PROCEDURE Arg1:E32 Arg2:E24 +R51 BEFORE Arg1:E24 Arg2:E33 +* OVERLAP E33 E34 E35 E36 E37 E38 E39 E40 E41 E44 E43 E42 E45 E46 E48 E47