--- a +++ b/processing/MACCROBAT/24898994.ann @@ -0,0 +1,196 @@ +T1 Sex 2 7 woman +T2 Age 15 18 60s +T3 Outcome 2048 2052 died +E1 Outcome:T3 +T4 Date 2053 2073 several months later +E2 Date:T4 +T5 Therapeutic_procedure 2031 2043 chemotherapy +E3 Therapeutic_procedure:T5 +T6 Detailed_description 2020 2030 palliative +R1 MODIFY Arg1:T6 Arg2:E3 +T7 Diagnostic_procedure 37 43 screen +E4 Diagnostic_procedure:T7 +T8 Disease_disorder 70 86 breast carcinoma +E5 Disease_disorder:T8 +T9 Detailed_description 62 69 lobular +T10 Detailed_description 53 61 invasive +R2 MODIFY Arg1:T9 Arg2:E5 +R3 MODIFY Arg1:T10 Arg2:E5 +T11 Biological_structure 94 106 right breast +R4 MODIFY Arg1:T11 Arg2:E5 +T12 Disease_disorder 120 136 ductal carcinoma +E6 Disease_disorder:T12 +T13 Detailed_description 111 119 invasive +R5 MODIFY Arg1:T13 Arg2:E6 +T14 Detailed_description 138 153 no special type +R6 MODIFY Arg1:T14 Arg2:E6 +T15 Biological_structure 162 173 left breast +R7 MODIFY Arg1:T15 Arg2:E6 +T16 Diagnostic_procedure 183 193 CT imaging +E7 Diagnostic_procedure:T16 +T17 Therapeutic_procedure 203 213 mastectomy +E8 Therapeutic_procedure:T17 +T18 Sign_symptom 236 240 mass +E9 Sign_symptom:T18 +T19 Biological_structure 229 235 pelvic +R8 MODIFY Arg1:T19 Arg2:E9 +T20 Distance 223 228 12 cm +R9 MODIFY Arg1:T20 Arg2:E9 +T21 Sign_symptom 289 296 fibroid +E10 Sign_symptom:T21 +A1 POLARITY E10 UNCERTAIN +T22 Biological_structure 297 303 uterus +R10 MODIFY Arg1:T22 Arg2:E10 +T23 Sign_symptom 331 339 bleeding +E11 Sign_symptom:T23 +T24 Detailed_description 316 330 postmenopausal +R11 MODIFY Arg1:T24 Arg2:E11 +T25 Diagnostic_procedure 383 389 biopsy +E12 Diagnostic_procedure:T25 +T26 Diagnostic_procedure 366 378 hysteroscopy +E13 Diagnostic_procedure:T26 +T27 Diagnostic_procedure 354 364 ultrasound +E14 Diagnostic_procedure:T27 +T28 Biological_structure 347 353 pelvic +R12 MODIFY Arg1:T28 Arg2:E14 +T29 Diagnostic_procedure 395 401 biopsy +E15 Diagnostic_procedure:T29 +T30 Disease_disorder 426 433 sarcoma +E16 Disease_disorder:T30 +T31 Detailed_description 409 425 undifferentiated +R13 MODIFY Arg1:T31 Arg2:E16 +T32 Diagnostic_procedure 455 475 immunohistochemistry +E17 Diagnostic_procedure:T32 +T33 Lab_value 435 449 unclassifiable +R14 MODIFY Arg1:T33 Arg2:E17 +R15 MODIFY Arg1:E16 Arg2:E17 +T34 Sign_symptom 563 569 tumour +E18 Sign_symptom:T34 +T35 Biological_structure 555 562 uterine +R16 MODIFY Arg1:T35 Arg2:E18 +T36 Detailed_description 585 603 primary malignancy +R17 MODIFY Arg1:T36 Arg2:E18 +T37 Disease_disorder 616 626 metastasis +E19 Disease_disorder:T37 +A2 POLARITY E19 MAYBE_NEG +T38 Biological_structure 636 642 breast +R18 MODIFY Arg1:T38 Arg2:E19 +T39 Therapeutic_procedure 644 656 Hysterectomy +E20 Therapeutic_procedure:T39 +T40 Therapeutic_procedure 671 692 salpingo-oophorectomy +E21 Therapeutic_procedure:T40 +T41 Detailed_description 661 670 bilateral +R19 MODIFY Arg1:T41 Arg2:E21 +T42 Diagnostic_procedure 809 833 Histological examination +E22 Diagnostic_procedure:T42 +T43 Sign_symptom 888 894 tumour +E23 Sign_symptom:T43 +T44 Detailed_description 869 887 partially necrotic +R20 MODIFY Arg1:T44 Arg2:E23 +T45 Detailed_description 902 918 discrete outline +R21 MODIFY Arg1:T45 Arg2:E23 +T46 Biological_structure 963 973 myometrium +R22 MODIFY Arg1:T46 Arg2:E23 +T47 Coreference 979 985 tumour +E24 Coreference:T47 +R23 IDENTICAL Arg1:E24 Arg2:E23 +T48 Detailed_description 1002 1025 malignant spindle cells +R24 MODIFY Arg1:T48 Arg2:E24 +T49 Detailed_description 1073 1090 pleomorphic cells +R25 MODIFY Arg1:T49 Arg2:E24 +T50 Detailed_description 1105 1127 eosinophilic cytoplasm +R26 MODIFY Arg1:T50 Arg2:T49 +T51 Sign_symptom 1155 1166 giant cells +E25 Sign_symptom:T51 +T52 Detailed_description 1129 1138 Plentiful +R27 MODIFY Arg1:T52 Arg2:E25 +T53 Detailed_description 1139 1154 osteoclast-like +R28 MODIFY Arg1:T53 Arg2:E25 +T54 Diagnostic_procedure 1193 1200 Mitoses +E26 Diagnostic_procedure:T54 +T55 Lab_value 1206 1214 numerous +R29 MODIFY Arg1:T55 Arg2:E26 +T56 Sign_symptom 1219 1246 structurally abnormal forms +E27 Sign_symptom:T56 +T57 Diagnostic_procedure 1558 1577 immunohistochemical +E28 Diagnostic_procedure:T57 +T58 Coreference 1260 1276 Neoplastic cells +E29 Coreference:T58 +T59 Coreference 1538 1550 Tumour cells +E30 Coreference:T59 +T60 Diagnostic_procedure 1593 1601 vimentin +E31 Diagnostic_procedure:T60 +T61 Diagnostic_procedure 1603 1622 smooth muscle actin +E32 Diagnostic_procedure:T61 +T62 Diagnostic_procedure 1624 1627 SMA +E33 Diagnostic_procedure:T62 +R30 IDENTICAL Arg1:E33 Arg2:E32 +T63 Diagnostic_procedure 1630 1636 desmin +E34 Diagnostic_procedure:T63 +T65 Diagnostic_procedure 1651 1655 CD99 +E36 Diagnostic_procedure:T65 +T66 Diagnostic_procedure 1657 1675 Epithelial markers +E37 Diagnostic_procedure:T66 +T67 Lab_value 1681 1694 not expressed +R32 MODIFY Arg1:T67 Arg2:E37 +T68 Lab_value 1578 1588 expression +R33 SUB_PROCEDURE Arg1:E31 Arg2:E28 +R34 SUB_PROCEDURE Arg1:E32 Arg2:E28 +R35 SUB_PROCEDURE Arg1:E34 Arg2:E28 +R31 SUB_PROCEDURE Arg1:E36 Arg2:E28 +T64 Lab_value 1638 1645 focally +R36 MODIFY Arg1:T64 Arg2:E34 +R37 MODIFY Arg1:T68 Arg2:E31 +R38 MODIFY Arg1:T68 Arg2:E32 +R39 MODIFY Arg1:T68 Arg2:E34 +R40 MODIFY Arg1:T68 Arg2:E36 +T69 Disease_disorder 1811 1823 osteosarcoma +E35 Disease_disorder:T69 +T70 Detailed_description 1771 1807 primary uterine osteoblastic variant +R41 MODIFY Arg1:T70 Arg2:E35 +T71 Diagnostic_procedure 1867 1877 CT imaging +E38 Diagnostic_procedure:T71 +T72 Sign_symptom 1938 1946 deposits +E39 Sign_symptom:T72 +T73 Biological_structure 1928 1937 pulmonary +T74 Biological_structure 1913 1923 peritoneal +T75 Detailed_description 1904 1912 multiple +R42 MODIFY Arg1:T73 Arg2:E39 +R43 MODIFY Arg1:T74 Arg2:E39 +R44 MODIFY Arg1:T75 Arg2:E39 +T76 Disease_disorder 1985 1997 osteosarcoma +E40 Disease_disorder:T76 +T77 Detailed_description 1974 1984 metastatic +R45 MODIFY Arg1:T77 Arg2:E40 +T78 Diagnostic_procedure 1961 1967 biopsy +E41 Diagnostic_procedure:T78 +R46 BEFORE Arg1:E4 Arg2:E5 +* OVERLAP E5 E6 +R47 BEFORE Arg1:E6 Arg2:E7 +R48 BEFORE Arg1:E7 Arg2:E8 +R49 AFTER Arg1:E8 Arg2:E9 +* OVERLAP E9 E10 E11 +R50 BEFORE Arg1:E11 Arg2:E14 +* OVERLAP E14 E13 E12 E15 E16 E17 +R51 BEFORE Arg1:E17 Arg2:E18 +* OVERLAP E18 E19 +R52 BEFORE Arg1:E19 Arg2:E20 +* OVERLAP E20 E21 +T79 Therapeutic_procedure 791 807 adjuvant therapy +E42 Therapeutic_procedure:T79 +R53 BEFORE Arg1:E21 Arg2:E42 +R54 BEFORE Arg1:E42 Arg2:E22 +* OVERLAP E22 E23 E24 E25 E26 E27 E29 E43 E44 E30 E28 E37 E35 +R55 IDENTICAL Arg1:E29 Arg2:E24 +T80 Sign_symptom 1423 1453 neoplastic epithelial elements +E43 Sign_symptom:T80 +A3 POLARITY E43 NEG +T81 Disease_disorder 1503 1535 malignant mixed Müllerian tumour +E44 Disease_disorder:T81 +A4 POLARITY E44 NEG +R56 IDENTICAL Arg1:E30 Arg2:E29 +R57 BEFORE Arg1:E35 Arg2:E38 +* OVERLAP E38 E39 E41 E40 +R58 BEFORE Arg1:E40 Arg2:E3 +R59 BEFORE Arg1:E3 Arg2:E1 +* OVERLAP E1 E2