--- a +++ b/processing/MACCROBAT/23155491.ann @@ -0,0 +1,273 @@ +T1 Age 2 13 57-year-old +T2 Personal_background 14 20 Jewish +T3 Sex 21 24 man +T4 Disease_disorder 30 45 Crohn's disease +E1 Disease_disorder:T4 +T5 Disease_disorder 47 49 CD +E2 Disease_disorder:T5 +R1 IDENTICAL Arg1:E2 Arg2:E1 +T6 Biological_structure 58 63 ileum +R2 MODIFY Arg1:T6 Arg2:E1 +T7 Date 81 96 age of thirteen +E3 Date:T7 +T8 History 30 45 Crohn's disease +T9 Clinical_event 98 107 presented +E4 Clinical_event:T9 +T10 Disease_disorder 122 146 nonmelanoma skin cancers +E5 Disease_disorder:T10 +T11 Disease_disorder 148 153 NMSCs +E6 Disease_disorder:T11 +R3 IDENTICAL Arg1:E6 Arg2:E5 +T12 Detailed_description 113 121 multiple +R4 MODIFY Arg1:T12 Arg2:E5 +T13 Duration 176 198 over the past 16 years +E7 Duration:T13 +T14 Medication 259 269 thiopurine +E8 Medication:T14 +T15 Medication 270 286 6-mercaptopurine +E9 Medication:T15 +R5 SUB_PROCEDURE Arg1:E9 Arg2:E8 +T16 Dosage 235 251 prolonged course +R6 MODIFY Arg1:T16 Arg2:E8 +T17 Medication 288 302 mercaptopurine +E10 Medication:T17 +R7 IDENTICAL Arg1:E10 Arg2:E9 +T18 Disease_disorder 347 351 NMSC +E11 Disease_disorder:T18 +T19 Lab_value 344 346 84 +R8 MODIFY Arg1:T19 Arg2:E11 +T20 Nonbiological_location 364 374 our clinic +T21 Nonbiological_location 384 397 other clinics +T22 Lab_value 353 355 72 +T23 Coreference 356 360 NMSC +E12 Coreference:T23 +T24 Lab_value 376 378 12 +R9 IDENTICAL Arg1:E12 Arg2:E11 +R10 MODIFY Arg1:T20 Arg2:T22 +R11 MODIFY Arg1:T22 Arg2:E12 +R12 MODIFY Arg1:T21 Arg2:T24 +R13 MODIFY Arg1:T24 Arg2:E12 +T25 Diagnostic_procedure 420 426 biopsy +E13 Diagnostic_procedure:T25 +A1 POLARITY E13 UNCERTAIN +T26 Therapeutic_procedure 431 438 removal +E14 Therapeutic_procedure:T26 +A2 POLARITY E14 UNCERTAIN +T27 Disease_disorder 467 469 CD +E15 Disease_disorder:T27 +T28 Medication 497 510 sulfasalazine +E16 Medication:T28 +T29 Medication 528 536 steroids +E17 Medication:T29 +T30 Frequency 515 527 intermittent +R14 MODIFY Arg1:T30 Arg2:E17 +T31 Duration 563 576 past 20 years +E18 Duration:T31 +T32 Medication 596 600 6-MP +E19 Medication:T32 +T33 Medication 304 308 6-MP +E20 Medication:T33 +R15 IDENTICAL Arg1:E20 Arg2:E9 +T34 Frequency 601 606 daily +R16 MODIFY Arg1:T34 Arg2:E19 +T35 Duration 615 630 first ten years +E21 Duration:T35 +T36 Medication 647 651 6-MP +E22 Medication:T36 +T37 Lab_value 665 667 30 +T38 Disease_disorder 668 672 NMSC +E23 Disease_disorder:T38 +R17 MODIFY Arg1:T37 Arg2:E23 +T39 Disease_disorder 682 705 squamous cell carcinoma +E24 Disease_disorder:T39 +T40 Lab_value 674 676 14 +R18 MODIFY Arg1:T40 Arg2:E24 +T41 Disease_disorder 707 710 SCC +E25 Disease_disorder:T41 +R19 IDENTICAL Arg1:E25 Arg2:E24 +T42 Lab_value 716 718 16 +T43 Disease_disorder 724 744 basal cell carcinoma +E26 Disease_disorder:T43 +T44 Disease_disorder 746 749 BCC +E27 Disease_disorder:T44 +R20 IDENTICAL Arg1:E27 Arg2:E26 +T45 Therapeutic_procedure 773 780 treated +E28 Therapeutic_procedure:T45 +T46 Nonbiological_location 781 790 elsewhere +R21 MODIFY Arg1:T46 Arg2:E28 +T47 Duration 799 819 subsequent ten years +E29 Duration:T47 +T48 Date 826 835 past year +E30 Date:T48 +T49 Clinical_event 849 857 returned +E31 Clinical_event:T49 +T50 Nonbiological_location 865 871 clinic +R22 MODIFY Arg1:T50 Arg2:E31 +T51 Lab_value 882 885 100 +T52 Sign_symptom 890 897 lesions +E32 Sign_symptom:T52 +R23 MODIFY Arg1:T51 Arg2:E32 +T53 Lab_value 886 889 new +R24 MODIFY Arg1:T53 Arg2:E32 +T54 Disease_disorder 912 922 malignancy +E33 Disease_disorder:T54 +T55 Biological_structure 930 935 torso +T56 Biological_structure 940 951 extremities +R25 MODIFY Arg1:T55 Arg2:E33 +R26 MODIFY Arg1:T56 Arg2:E33 +T57 Lab_value 985 987 42 +T58 Sign_symptom 1002 1009 lesions +E34 Sign_symptom:T58 +T59 Disease_disorder 1013 1017 NMCS +E35 Disease_disorder:T59 +T60 Diagnostic_procedure 988 994 biopsy +E36 Diagnostic_procedure:T60 +R27 MODIFY Arg1:T57 Arg2:E34 +T61 Lab_value 1019 1021 20 +T62 Disease_disorder 1027 1030 SCC +E37 Disease_disorder:T62 +R28 MODIFY Arg1:T61 Arg2:E37 +T63 Lab_value 1035 1037 22 +T64 Disease_disorder 1043 1046 BCC +E38 Disease_disorder:T64 +R29 MODIFY Arg1:T63 Arg2:E38 +T65 Lab_value 1061 1066 three +T66 Disease_disorder 1074 1078 SCCs +E39 Disease_disorder:T66 +R30 MODIFY Arg1:T65 Arg2:E39 +T67 Lab_value 1084 1109 moderately differentiated +R31 MODIFY Arg1:T67 Arg2:T65 +T68 Lab_value 1114 1117 two +T69 Lab_value 1123 1144 poorly differentiated +R32 MODIFY Arg1:T69 Arg2:T68 +R33 MODIFY Arg1:T68 Arg2:E39 +T70 Therapeutic_procedure 1199 1211 Mohs surgery +E40 Therapeutic_procedure:T70 +T71 Therapeutic_procedure 1216 1228 xenografting +E41 Therapeutic_procedure:T71 +T72 Disease_disorder 1168 1180 skin cancers +E42 Disease_disorder:T72 +R34 MODIFY Arg1:E42 Arg2:E40 +R35 MODIFY Arg1:E42 Arg2:E41 +T73 Sign_symptom 1249 1256 lesions +E43 Sign_symptom:T73 +T74 Biological_structure 1261 1270 pretibial +R36 MODIFY Arg1:T74 Arg2:E43 +T75 Area 1284 1292 64x53 mm +R37 MODIFY Arg1:T75 Arg2:E43 +T76 Lab_value 1234 1241 largest +R38 MODIFY Arg1:T76 Arg2:E43 +T77 Diagnostic_procedure 1321 1327 biopsy +E44 Diagnostic_procedure:T77 +A3 POLARITY E44 NEG +T78 Sign_symptom 1355 1361 esions +E45 Sign_symptom:T78 +R39 MODIFY Arg1:E45 Arg2:E44 +T79 Diagnostic_procedure 1394 1403 skin type +E46 Diagnostic_procedure:T79 +T80 Lab_value 1379 1393 Fitzpatrick II +R40 MODIFY Arg1:T80 Arg2:E46 +T81 Activity 1430 1442 sun exposure +E47 Activity:T81 +T82 Detailed_description 1420 1429 excessive +R41 MODIFY Arg1:T82 Arg2:E47 +T83 Duration 1447 1455 25 years +E48 Duration:T83 +T84 Nonbiological_location 1459 1466 Hawai‘i +R42 MODIFY Arg1:T84 Arg2:E47 +R43 BEFORE Arg1:E48 Arg2:E47 +T85 Medication 1492 1501 sunscreen +E49 Medication:T85 +A4 POLARITY E49 NEG +T86 Date 1468 1476 Early on +E50 Date:T86 +T87 Activity 1513 1517 sail +E51 Activity:T87 +T88 Detailed_description 1530 1551 during peak sun hours +T89 Detailed_description 1520 1529 catamaran +R44 MODIFY Arg1:T89 Arg2:E51 +R45 MODIFY Arg1:T88 Arg2:E51 +T90 Subject 1579 1585 mother +T91 Detailed_description 1590 1620 one skin cancer lesion removed +R46 MODIFY Arg1:T91 Arg2:T90 +T92 Family_history 1579 1620 mother had one skin cancer lesion removed +T93 Activity 1651 1657 smoker +E52 Activity:T93 +A5 POLARITY E52 NEG +T94 History 1625 1657 denied ever having been a smoker +T95 History 1420 1455 excessive sun exposure for 25 years +T96 History 1480 1501 did not use sunscreen +T97 History 1513 1551 sail a catamaran during peak sun hours +T98 Date 1670 1679 past year +E53 Date:T98 +T99 Medication 1696 1700 6-MP +E54 Medication:T99 +A6 POLARITY E54 NEG +T100 Medication 1717 1727 mesalamine +E55 Medication:T100 +T101 Medication 1729 1736 Pentasa +E56 Medication:T101 +R47 IDENTICAL Arg1:E56 Arg2:E55 +T102 Medication 1748 1758 adalimumab +E57 Medication:T102 +T103 Medication 1760 1766 Humira +E58 Medication:T103 +R48 IDENTICAL Arg1:E58 Arg2:E57 +T104 Diagnostic_procedure 1843 1853 skin exams +E59 Diagnostic_procedure:T104 +T105 Frequency 1835 1842 monthly +R49 MODIFY Arg1:T105 Arg2:E59 +T106 Clinical_event 1871 1883 hospitalized +E60 Clinical_event:T106 +T107 Lab_value 1884 1892 16 times +R50 MODIFY Arg1:T107 Arg2:E60 +T108 Disease_disorder 1901 1903 CD +E61 Disease_disorder:T108 +T109 Therapeutic_procedure 1939 1948 resection +E62 Therapeutic_procedure:T109 +A7 POLARITY E62 NEG +T110 Biological_structure 1928 1938 intestinal +R51 MODIFY Arg1:T110 Arg2:E62 +T111 Clinical_event 1984 1999 hospitalization +E63 Clinical_event:T111 +T112 Disease_disorder 2033 2047 adenocarcinoma +E64 Disease_disorder:T112 +T113 Detailed_description 2022 2032 metastatic +R52 MODIFY Arg1:T113 Arg2:E64 +T114 Biological_structure 2055 2066 small bowel +R53 MODIFY Arg1:T114 Arg2:E64 +T115 Outcome 2072 2083 passed away +E65 Outcome:T115 +T116 Date 2084 2097 shortly after +E66 Date:T116 +* OVERLAP E1 E3 +R54 BEFORE Arg1:E3 Arg2:E4 +R55 AFTER Arg1:E4 Arg2:E5 +* OVERLAP E5 E7 E8 +R56 BEFORE Arg1:E8 Arg2:E11 +* OVERLAP E11 E13 E14 E67 +T117 Sign_symptom 454 461 lesions +E67 Sign_symptom:T117 +R57 AFTER Arg1:E67 Arg2:E15 +* OVERLAP E15 E16 E17 +R58 BEFORE Arg1:E17 Arg2:E18 +* OVERLAP E18 E19 +R59 AFTER Arg1:E19 Arg2:E21 +* OVERLAP E21 E22 E23 E24 E26 +R60 MODIFY Arg1:T42 Arg2:E26 +R61 BEFORE Arg1:E26 Arg2:E28 +* OVERLAP E28 E29 +R62 BEFORE Arg1:E29 Arg2:E30 +* OVERLAP E30 E31 E32 E33 +R63 AFTER Arg1:E33 Arg2:E36 +* OVERLAP E36 E34 E35 E37 E38 E39 E42 E40 E41 E43 E44 E45 E46 +R64 AFTER Arg1:E46 Arg2:E47 +* OVERLAP E47 E50 E49 E51 E52 +R65 BEFORE Arg1:E52 Arg2:E53 +* OVERLAP E53 E54 E55 +R66 BEFORE Arg1:E55 Arg2:E57 +* OVERLAP E57 E59 E60 E61 E62 +R67 BEFORE Arg1:E62 Arg2:E63 +* OVERLAP E63 E64 +R68 BEFORE Arg1:E64 Arg2:E65 +* OVERLAP E65 E66