--- a +++ b/gen_unfold_template/README.md @@ -0,0 +1,20 @@ +This workflow generates a set of custom density unfolded templates, with adaptive spacing designed to result in (mostly) constant surface area when transformed to native space + + + +Requirements: + - https://github.com/gllmflndn/gifti (clone into this folder) + - matlab + - hippunfold with uniform template run on a set of subjects + - here we used HCP UR100, and hippunfold unfoldDG branch + - it uses this to create an average surface area (gyrification) map + +To run for hipp surf: +``` +snakemake -np --configfile config_dentate.yml +``` + +To run for dentate surf: +``` +snakemake -np --configfile config_dentate.yml +```