[d15511]: / gen_unfold_template / README.md

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This workflow generates a set of custom density unfolded templates, with adaptive spacing designed to result in (mostly) constant surface area when transformed to native space

Requirements:
- https://github.com/gllmflndn/gifti (clone into this folder)
- matlab
- hippunfold with uniform template run on a set of subjects
- here we used HCP UR100, and hippunfold unfoldDG branch
- it uses this to create an average surface area (gyrification) map

To run for hipp surf:

snakemake -np --configfile config_dentate.yml

To run for dentate surf:

snakemake -np --configfile config_dentate.yml