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+ANTsR_Name ANTsPy_Name Description 
+abpN4 |  | 
+affineInitializer |  |   a multi-start optimizer for affine registration
+mean |  |,antsImage-method   arith.antsImage
+antsImageClone |  |  
+antsMotionCalculation |  |   Correct 4D time-series data for motion.
+antsRegistration |  |    
+antsImagePhysicalSpaceConsistency |  |   Check for physical space consistency
+antsImageRead |  |   
+antsrimpute |  | 
+antsImageHeaderInfo |  | Read file info from image header
+antsMotionCorr |  |  Motion Correction
+antsImageGetSet |  | antsImageGetSet
+antsImageMutualInformation |  |  mutual information between two images
+antsImageWrite |  |  
+antsSetPixels |  |   Set a pixel value at an index
+aslDenoiseR |  | 
+aslPerfusion |  |    
+antsTransformIndexToPhysicalPoint |  |   Get Spatial Point from Index
+as.antsImage  |  |
+antsTransformPhysicalPointToIndex |  |   Get Index from Spatial Point
+antsSpatialICAfMRI |  |  
+aslOutlierRejection |  | Pair-wise subtraction based outlier rejection.
+atropos |  | FMM Segmentation
+as.antsMatrix |  |   as.antsMatrix
+combineNuisancePredictors |  |   Combine and reduce dimensionality of nuisance predictors.
+clusterTimeSeries |  |   Split time series image into k distinct images
+bigLMStats |  |  
+bayesianlm |  |  Simple bayesian regression function.
+computeDVARS |  |    computeDVARS
+compcor |  | 
+basicInPaint |  |    Inpaints missing imaging data from boundary data
+bayesianCBF |  | Uses probabilistic segmentation to constrain pcasl-based cbf computation.
+blockStimulus |  |   
+bold_correlation_matrix |  | bold_correlation_matrix
+crossvalidatedR2 |  |    Cross-Validated R^2 value
+createJacobianDeterminantImage |  |  createJacobianDeterminantImage
+DesikanKillianyTourville |  |    DesikanKillianyTourville
+eigSeg |  |  
+cropImage |  |   crop a sub-image via a mask
+cropIndices |  | crop a sub-image by image indices
+convolveImage |  |   convolve one image with another
+corw |  |    
+cvEigenanatomy |  |  
+decropImage |  | decrop a sub-image back into the full image
+getMask |  | 
+getfMRInuisanceVariables |  |    
+getNeighborhoodInMask |  |   Get neighborhoods for voxels within mask
+getPixels |  |   Get Pixels
+icawhiten |  |   
+image2ClusterImages |  | 
+imageFileNames2ImageList |  |    
+imageListToMatrix |  |   
+iMath |  |   iMath
+iMathOps |  |    iMathOps
+maskImage |  |   
+matrix2timeseries |  |   Simple matrix2timeseries function.
+getAverageOfTimeSeries |  |  
+getCentroids |  |    
+hemodynamicRF |  |   Linear Model for FMRI Data
+iBind |  |   iBind
+initializeEigenanatomy |  |  
+interleaveMatrixWithItself |  |  
+labelStats |  |  labelStats
+lappend |  | 
+makeGraph |  |   
+makeImage |  |   
+partialVolumeCorrection |  | 
+projectImageAlongAxis |  |   
+perfusionregression |  | 
+quantifyCBF |  | 
+sparseDecom |  | 
+sparseDecom2 |  |    
+usePkg |  |  Use any package. If package is not installed, this will install from CRAN.
+vwnrfs |  |  voxelwise neighborhood random forest segmentation and prediction
+antsApplyTransforms |  | 
+n4BiasFieldCorrection |  |   Bias Field Correction
+reorientImage |  |   reorient image by its principal axis
+renderSurfaceFunction |  |   
+rfSegmentationPredict |  |   
+subjectDataToGroupDataFrame |  | 
+timeseries2matrix |  |   
+rsfDenoise |  |  
+taskFMRI |  |    
+timeseriesN3 |  |    Run N3 on slices of timeseries.
+filterfMRIforNetworkAnalysis |  |    
+getNeighborhoodAtVoxel |  |  Get a hypercube neighborhood at a voxel
+imagesToMatrix |  |  
+getMultivariateTemplateCoordinates |  |  
+lowrankRowMatrix |  |    Produces a low rank version of the input matrix
+imageMath |  |   R access to the ANTs program ImageMath
+labelGeometryMeasures |  |   labelGeometryMeasures
+labelImageCentroids |  | labelImageCentroids
+frequencyFilterfMRI |  | 
+antsBOLDNetworkAnalysis |  | a basic framework for network analysis that produces graph metrics
+antsCopyImageInfo |  |   Copy header info
+getANTsRData |  |    getANTsRData
+plotBasicNetwork |  |    
+getASLNoisePredictors |  |   Get nuisance predictors from ASL images
+is.antsImage   |  |  is.antsImage
+joinEigenanatomy |  |    
+invariantImageSimilarity |  |    similarity metrics between two images as a function of geometry
+jointIntensityFusion |  |    joint intensity fusion
+aal |  | aal
+plot.antsImage |  | Plotting an image slice or multi-slice with optional color overlay.
+abpBrainExtraction |  |  
+getTemplateCoordinates |  |  
+extractSlice |  |    extract a slice from an image
+%>%  |  |  Pipe an object forward
+exemplarInpainting |  |  Uses example images to inpaint or approximate an existing image.
+quantifySNPs |  |    Simple quantifySNPs function.
+rapidlyInspectImageData |  | Simple rapidlyInspectImageData function.
+whiten |  |  
+temporalwhiten |  |  
+thresholdImage |  |  Threshold Image
+jointIntensityFusion3D |  |  jointIntensityFusion3D
+antsAverageImages |  |   Computes average of image list
+kellyKapowski |  |   Compute cortical thickness using the DiReCT algorithm.
+mrvnrfs  |  | multi-res voxelwise neighborhood random forest segmentation learning
+mrvnrfs.predict  |  |  multi-res voxelwise neighborhood random forest segmentation
+n3BiasFieldCorrection |  |   Bias Field Correction
+plotPrettyGraph |  | 
+preprocessfMRI |  |  Preprocess BOLD fMRI image data.
+reflectImage |  |    reflectImage
+sparseDecom2boot |  |    
+sparseDecomboot |  | 
+regressionNetworkViz |  |    
+timeserieswindow2matrix |  | 
+tracts |  |  tracts
+save.ANTsR  |  | save.ANTsR
+segmentShapeFromImage |  |   convolution-based shape identification
+kmeansSegmentation |  |  k means image segmentation.
+labelClusters |  |   
+matrixToImages |  |  
+networkEiganat |  |  
+mni2tal |  | 
+pairwiseImageDistanceMatrix |  | 
+regressProjections |  |  
+renderImageLabels |  |   
+sliceTimingCorrection |  |   slice timing correction for fMRI.
+sparseRegression |  |    
+smoothImage |  | Smooth image
+spatialbayesianlm |  |   spatially constrained bayesian regression function.
+make3ViewPNG |  |    
+resampleImage |  |   resampleImage
+rfSegmentation |  |  
+splitData |  |   
+subgradientL1Regression |  | 
+antsPreprocessfMRI |  |  
+as.matrix   |  | 
+as.numeric   |  |
+perfusion-predictors   |  |  
+getROIValues |  |    
+phantom_population_study |  |    
+fastwhiten |  |  
+Motion-Correction  |  |   
+sccan |  |   
+as.antsImage  |  |    
+as.array   |  |
+MeasureMinMaxMean |  |   
+plotANTsImage |  |   
+renderNetwork |  |   
+visualizeBlob |  |   
+inspectImageData3D |  |  
+antsImage-class  |  | 
+CBF |  | 
+simple_roi_analysis |  | 
+simple_voxel_based_analysis |  | 
+KellyKapowski |  |   
+Atropos |  | 
+Extract |  | 
+SmoothImage |  | 
+N3BiasFieldCorrection |  |   
+ImageMath |  |   
+Comparison |  |  
+ThresholdImage |  |  
+antsMatrix-class   |  |  An S4 class to hold an antsMatrix imported from ITK types
+antsRegion-class   |  |  An S4 class to hold a region of an antsImage
+%>%  |  | Pipe an object forward