ANTsR_Name ANTsPy_Name Description
abpN4 | |
affineInitializer | | a multi-start optimizer for affine registration
mean | |,antsImage-method arith.antsImage
antsImageClone | |
antsMotionCalculation | | Correct 4D time-series data for motion.
antsRegistration | |
antsImagePhysicalSpaceConsistency | | Check for physical space consistency
antsImageRead | |
antsrimpute | |
antsImageHeaderInfo | | Read file info from image header
antsMotionCorr | | Motion Correction
antsImageGetSet | | antsImageGetSet
antsImageMutualInformation | | mutual information between two images
antsImageWrite | |
antsSetPixels | | Set a pixel value at an index
aslDenoiseR | |
aslPerfusion | |
antsTransformIndexToPhysicalPoint | | Get Spatial Point from Index
as.antsImage | |
antsTransformPhysicalPointToIndex | | Get Index from Spatial Point
antsSpatialICAfMRI | |
aslOutlierRejection | | Pair-wise subtraction based outlier rejection.
atropos | | FMM Segmentation
as.antsMatrix | | as.antsMatrix
combineNuisancePredictors | | Combine and reduce dimensionality of nuisance predictors.
clusterTimeSeries | | Split time series image into k distinct images
bigLMStats | |
bayesianlm | | Simple bayesian regression function.
computeDVARS | | computeDVARS
compcor | |
basicInPaint | | Inpaints missing imaging data from boundary data
bayesianCBF | | Uses probabilistic segmentation to constrain pcasl-based cbf computation.
blockStimulus | |
bold_correlation_matrix | | bold_correlation_matrix
crossvalidatedR2 | | Cross-Validated R^2 value
createJacobianDeterminantImage | | createJacobianDeterminantImage
DesikanKillianyTourville | | DesikanKillianyTourville
eigSeg | |
cropImage | | crop a sub-image via a mask
cropIndices | | crop a sub-image by image indices
convolveImage | | convolve one image with another
corw | |
cvEigenanatomy | |
decropImage | | decrop a sub-image back into the full image
getMask | |
getfMRInuisanceVariables | |
getNeighborhoodInMask | | Get neighborhoods for voxels within mask
getPixels | | Get Pixels
icawhiten | |
image2ClusterImages | |
imageFileNames2ImageList | |
imageListToMatrix | |
iMath | | iMath
iMathOps | | iMathOps
maskImage | |
matrix2timeseries | | Simple matrix2timeseries function.
getAverageOfTimeSeries | |
getCentroids | |
hemodynamicRF | | Linear Model for FMRI Data
iBind | | iBind
initializeEigenanatomy | |
interleaveMatrixWithItself | |
labelStats | | labelStats
lappend | |
makeGraph | |
makeImage | |
partialVolumeCorrection | |
projectImageAlongAxis | |
perfusionregression | |
quantifyCBF | |
sparseDecom | |
sparseDecom2 | |
usePkg | | Use any package. If package is not installed, this will install from CRAN.
vwnrfs | | voxelwise neighborhood random forest segmentation and prediction
antsApplyTransforms | |
n4BiasFieldCorrection | | Bias Field Correction
reorientImage | | reorient image by its principal axis
renderSurfaceFunction | |
rfSegmentationPredict | |
subjectDataToGroupDataFrame | |
timeseries2matrix | |
rsfDenoise | |
taskFMRI | |
timeseriesN3 | | Run N3 on slices of timeseries.
filterfMRIforNetworkAnalysis | |
getNeighborhoodAtVoxel | | Get a hypercube neighborhood at a voxel
imagesToMatrix | |
getMultivariateTemplateCoordinates | |
lowrankRowMatrix | | Produces a low rank version of the input matrix
imageMath | | R access to the ANTs program ImageMath
labelGeometryMeasures | | labelGeometryMeasures
labelImageCentroids | | labelImageCentroids
frequencyFilterfMRI | |
antsBOLDNetworkAnalysis | | a basic framework for network analysis that produces graph metrics
antsCopyImageInfo | | Copy header info
getANTsRData | | getANTsRData
plotBasicNetwork | |
getASLNoisePredictors | | Get nuisance predictors from ASL images
is.antsImage | | is.antsImage
joinEigenanatomy | |
invariantImageSimilarity | | similarity metrics between two images as a function of geometry
jointIntensityFusion | | joint intensity fusion
aal | | aal
plot.antsImage | | Plotting an image slice or multi-slice with optional color overlay.
abpBrainExtraction | |
getTemplateCoordinates | |
extractSlice | | extract a slice from an image
%>% | | Pipe an object forward
exemplarInpainting | | Uses example images to inpaint or approximate an existing image.
quantifySNPs | | Simple quantifySNPs function.
rapidlyInspectImageData | | Simple rapidlyInspectImageData function.
whiten | |
temporalwhiten | |
thresholdImage | | Threshold Image
jointIntensityFusion3D | | jointIntensityFusion3D
antsAverageImages | | Computes average of image list
kellyKapowski | | Compute cortical thickness using the DiReCT algorithm.
mrvnrfs | | multi-res voxelwise neighborhood random forest segmentation learning
mrvnrfs.predict | | multi-res voxelwise neighborhood random forest segmentation
n3BiasFieldCorrection | | Bias Field Correction
plotPrettyGraph | |
preprocessfMRI | | Preprocess BOLD fMRI image data.
reflectImage | | reflectImage
sparseDecom2boot | |
sparseDecomboot | |
regressionNetworkViz | |
timeserieswindow2matrix | |
tracts | | tracts
save.ANTsR | | save.ANTsR
segmentShapeFromImage | | convolution-based shape identification
kmeansSegmentation | | k means image segmentation.
labelClusters | |
matrixToImages | |
networkEiganat | |
mni2tal | |
pairwiseImageDistanceMatrix | |
regressProjections | |
renderImageLabels | |
sliceTimingCorrection | | slice timing correction for fMRI.
sparseRegression | |
smoothImage | | Smooth image
spatialbayesianlm | | spatially constrained bayesian regression function.
make3ViewPNG | |
resampleImage | | resampleImage
rfSegmentation | |
splitData | |
subgradientL1Regression | |
antsPreprocessfMRI | |
as.matrix | |
as.numeric | |
perfusion-predictors | |
getROIValues | |
phantom_population_study | |
fastwhiten | |
Motion-Correction | |
sccan | |
as.antsImage | |
as.array | |
MeasureMinMaxMean | |
plotANTsImage | |
renderNetwork | |
visualizeBlob | |
inspectImageData3D | |
antsImage-class | |
CBF | |
simple_roi_analysis | |
simple_voxel_based_analysis | |
KellyKapowski | |
Atropos | |
Extract | |
SmoothImage | |
N3BiasFieldCorrection | |
ImageMath | |
Comparison | |
ThresholdImage | |
antsMatrix-class | | An S4 class to hold an antsMatrix imported from ITK types
antsRegion-class | | An S4 class to hold a region of an antsImage
%>% | | Pipe an object forward