# | CHROM | POS | ID | REF | ALT | if_MuTect | if_VarScan2 | if_JointSNVMix2 | if_SomaticSniper | if_VarDict | MuSE_Tier | if_LoFreq | if_Scalpel | if_Strelka | if_TNscope | Strelka_Score | Strelka_QSS | Strelka_TQSS | VarScan2_Score | SNVMix2_Score | Sniper_Score | VarDict_Score | if_dbsnp | COMMON | if_COSMIC | COSMIC_CNT | Consistent_Mates | Inconsistent_Mates | N_DP | nBAM_REF_MQ | nBAM_ALT_MQ | nBAM_Z_Ranksums_MQ | nBAM_REF_BQ | nBAM_ALT_BQ | nBAM_Z_Ranksums_BQ | nBAM_REF_NM | nBAM_ALT_NM | nBAM_NM_Diff | nBAM_REF_Concordant | nBAM_REF_Discordant | nBAM_ALT_Concordant | nBAM_ALT_Discordant | nBAM_Concordance_FET | N_REF_FOR | N_REF_REV | N_ALT_FOR | N_ALT_REV | nBAM_StrandBias_FET | nBAM_Z_Ranksums_EndPos | nBAM_REF_Clipped_Reads | nBAM_ALT_Clipped_Reads | nBAM_Clipping_FET | nBAM_MQ0 | nBAM_Other_Reads | nBAM_Poor_Reads | nBAM_REF_InDel_3bp | nBAM_REF_InDel_2bp | nBAM_REF_InDel_1bp | nBAM_ALT_InDel_3bp | nBAM_ALT_InDel_2bp | nBAM_ALT_InDel_1bp | M2_NLOD | M2_TLOD | M2_STR | M2_ECNT | SOR | MSI | MSILEN | SHIFT3 | MaxHomopolymer_Length | SiteHomopolymer_Length | T_DP | tBAM_REF_MQ | tBAM_ALT_MQ | tBAM_Z_Ranksums_MQ | tBAM_REF_BQ | tBAM_ALT_BQ | tBAM_Z_Ranksums_BQ | tBAM_REF_NM | tBAM_ALT_NM | tBAM_NM_Diff | tBAM_REF_Concordant | tBAM_REF_Discordant | tBAM_ALT_Concordant | tBAM_ALT_Discordant | tBAM_Concordance_FET | T_REF_FOR | T_REF_REV | T_ALT_FOR | T_ALT_REV | tBAM_StrandBias_FET | tBAM_Z_Ranksums_EndPos | tBAM_REF_Clipped_Reads | tBAM_ALT_Clipped_Reads | tBAM_Clipping_FET | tBAM_MQ0 | tBAM_Other_Reads | tBAM_Poor_Reads | tBAM_REF_InDel_3bp | tBAM_REF_InDel_2bp | tBAM_REF_InDel_1bp | tBAM_ALT_InDel_3bp | tBAM_ALT_InDel_2bp | tBAM_ALT_InDel_1bp | InDel_Length | TrueVariant_or_False |
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1 | 22 | 21989959 | rs140863589 | AAG | A | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 17.18 | False | False | 67.24 | 0 | 0 | 50.00 | 1 | 1 | 0 | 0 | 9 | 0 | 74 | 60 | 0 | 0 | 33.7027 | 0 | 0 | 0.256757 | 0 | 0 | 74 | 0 | 0 | 0 | 1.00 | 27 | 47 | 0 | 0 | 1.00 | 0 | 4 | 0 | 1.00 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 16.79 | 72.79 | 0 | 1 | 0.0 | 2.0 | 1.0 | 0.0 | 3 | 2 | 135 | 60 | 60.9375 | 0.799385 | 33.0874 | 34.6562 | 4.51691 | 0.203883 | 2.1875 | -0.0163835 | 102 | 1 | 32 | 0 | 1.00 | 31 | 72 | 11 | 21 | 0.67 | 0.134524 | 3 | 2 | 0.59 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | -2 | 0 |
2 | 22 | 21330787 | rs7285694 | C | T | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 19.98 | 202 | 1 | 149.31 | 0 | 114 | 100 | 1 | 1 | 0 | 0 | 20 | 0 | 165 | 60 | 0 | 0 | 34.503 | 0 | 0 | 0.309091 | 0 | 0 | 165 | 0 | 0 | 0 | 1.00 | 70 | 95 | 0 | 0 | 1.00 | 0 | 10 | 0 | 1.00 | 0 | 0 | 0 | 2 | 1 | 1 | 0 | 0 | 0 | 38.31 | 183.62 | 0 | 1 | 0.0 | 3.0 | 1.0 | 0.0 | 3 | 3 | 387 | 60 | 60 | 0 | 34.896 | 33.2644 | -6.29209 | 0.181208 | 1.21839 | 1.03718 | 298 | 0 | 86 | 1 | 0.23 | 144 | 154 | 37 | 50 | 0.39 | -0.756671 | 15 | 8 | 0.19 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
3 | 22 | 21332122 | rs178277 | G | A | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 17.77 | 173 | 2 | 119.21 | 0 | 68 | 100 | 1 | 1 | 0 | 0 | 7 | 0 | 141 | 60 | 0 | 0 | 34.7163 | 0 | 0 | 0.248227 | 0 | 0 | 141 | 0 | 0 | 0 | 1.00 | 78 | 63 | 0 | 0 | 1.00 | 0 | 9 | 0 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 33.3 | 146.25 | 0 | 1 | 0.0 | 2.0 | 1.0 | 0.0 | 4 | 2 | 268 | 59.9043 | 60 | 0.0561096 | 34.823 | 33.8983 | -4.35848 | 0.263158 | 1.16949 | 0.906334 | 209 | 0 | 59 | 0 | 1.00 | 121 | 88 | 37 | 22 | 0.55 | 0.283401 | 15 | 3 | 0.77 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
4 | 22 | 21334924 | rs105034 | G | C | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 19.98 | 102 | 1 | 49.18 | 0 | 151 | 40.00 | 1 | 1 | 0 | 0 | 4 | 0 | 57 | 60 | 0 | 0 | 37.5439 | 0 | 0 | 0.526316 | 0 | 0 | 57 | 0 | 0 | 0 | 1.00 | 43 | 14 | 0 | 0 | 1.00 | 0 | 3 | 0 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.14 | 59.15 | 0 | 1 | 0.0 | 2.0 | 2.0 | 1.0 | 4 | 3 | 101 | 60 | 60 | 0 | 37.8846 | 37.1739 | -1.97187 | 0.538462 | 2.6087 | 2.07023 | 78 | 0 | 23 | 0 | 1.00 | 58 | 20 | 16 | 7 | 0.79 | -0.202451 | 7 | 1 | 0.68 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
5 | 22 | 21335259 | rs178278 | C | A | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 19.87 | 149 | 1 | 94.20 | 0 | 0 | 100 | 1 | 1 | 0 | 0 | 11 | 0 | 135 | 60 | 0 | 0 | 35.1556 | 0 | 0 | 0.118519 | 0 | 0 | 135 | 0 | 0 | 0 | 1.00 | 69 | 66 | 0 | 0 | 1.00 | 0 | 8 | 0 | 1.00 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 26.93 | 81.64 | 0 | 1 | 0.0 | 4.0 | 1.0 | 0.0 | 4 | 4 | 234 | 60 | 60 | 0 | 35.0632 | 31.75 | -5.50023 | 0.136842 | 1.04545 | 0.908612 | 190 | 0 | 44 | 0 | 1.00 | 98 | 92 | 23 | 21 | 1.00 | 1.73496 | 14 | 0 | 0.08 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
6 | 22 | 21384516 | rs61740649 | C | T | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 19.98 | 108 | 2 | 53.85 | 0 | 121 | 43.01 | 1 | 1 | 0 | 0 | 5 | 0 | 47 | 60 | 0 | 0 | 33.4043 | 0 | 0 | 0.340426 | 0 | 0 | 47 | 0 | 0 | 0 | 1.00 | 15 | 32 | 0 | 0 | 1.00 | 0 | 4 | 0 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10.23 | 64.12 | 0 | 1 | 0.0 | 1.0 | 1.0 | 0.0 | 6 | 6 | 90 | 60 | 60 | 0 | 33.3594 | 35.0385 | 3.365 | 0.375 | 1.11538 | 0.740385 | 63 | 1 | 26 | 0 | 1.00 | 22 | 42 | 7 | 19 | 0.62 | 0.698816 | 4 | 3 | 0.41 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
7 | 22 | 21982892 | rs2298428 | C | T | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 19.98 | 133 | 1 | 78.56 | 0 | 182 | 100 | 1 | 1 | 0 | 0 | 10 | 0 | 68 | 60 | 0 | 0 | 35.4412 | 0 | 0 | 0.0882353 | 0 | 0 | 68 | 0 | 0 | 0 | 1.00 | 34 | 34 | 0 | 0 | 1.00 | 0 | 8 | 0 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15.04 | 91.15 | 0 | 1 | 0.0 | 1.0 | 1.0 | 0.0 | 4 | 2 | 152 | 60 | 60 | 0 | 35.156 | 33.0698 | -4.29932 | 0.110092 | 1.06977 | 0.959676 | 109 | 0 | 43 | 0 | 1.00 | 55 | 54 | 22 | 21 | 1.00 | 0.155447 | 6 | 0 | 0.18 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
8 | 22 | 21983260 | rs2298429 | A | G | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 19.98 | 142 | 1 | 89.34 | 0 | 152 | 100 | 1 | 1 | 0 | 0 | 12 | 0 | 57 | 60 | 0 | 0 | 33.6667 | 0 | 0 | 0.210526 | 0 | 0 | 57 | 0 | 0 | 0 | 1.00 | 32 | 25 | 0 | 0 | 1.00 | 0 | 9 | 0 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10.13 | 90.42 | 0 | 1 | 0.0 | 2.0 | 2.0 | 0.0 | 3 | 3 | 112 | 60 | 60 | 0 | 33.2143 | 33.4762 | -1.90819 | 0.214286 | 1.2619 | 1.04762 | 70 | 0 | 42 | 0 | 1.00 | 38 | 32 | 28 | 14 | 0.24 | -0.0480804 | 15 | 0 | 0.00 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |