--- a/README.md +++ b/README.md @@ -1,12 +1,12 @@ -# genomics -Deep learning in genomics - -<dl><dd><p align="center"><b>CCGAGGGCTATGGTTTGGAAGTTAGAACCCTGGGGCTTCTCGCGGACACC</b></p><dd></dl> -<p align="center"><img src="https://github.com/MicPie/genomics/blob/master/seq.png" width=30%></p> - -The notebooks in this repository are based on the [jupyter notebook](https://nbviewer.jupyter.org/github/abidlabs/deep-learning-genomics-primer/blob/master/A_Primer_on_Deep_Learning_in_Genomics_Public.ipynb) from the publication ["A primer on deep learning in genomics"](https://www.nature.com/articles/s41588-018-0295-5) but use the [PyTorch](https://pytorch.org) and [fastai](https://www.fast.ai) library. - -**Notebooks** -* [Basic model with PyTorch](https://nbviewer.jupyter.org/github/MicPie/genomics/blob/master/DL_Genomics_v8_basic-pytorch.ipynb) -* [Basic model with PyTorch and fastai](https://nbviewer.jupyter.org/github/MicPie/genomics/blob/master/DL_Genomics_v8_basic-fastai.ipynb) -* [Custom ResNet model with PyTorch and fastai](https://nbviewer.jupyter.org/github/MicPie/genomics/blob/master/DL_Genomics_v8_resnet-fastai.ipynb) +# genomics +Deep learning in genomics + +<dl><dd><p align="center"><b>CCGAGGGCTATGGTTTGGAAGTTAGAACCCTGGGGCTTCTCGCGGACACC</b></p><dd></dl> +<p align="center"><img src="https://github.com/MicPie/genomics/blob/master/seq.png?raw=true" width=30%></p> + +The notebooks in this repository are based on the [jupyter notebook](https://nbviewer.jupyter.org/github/abidlabs/deep-learning-genomics-primer/blob/master/A_Primer_on_Deep_Learning_in_Genomics_Public.ipynb) from the publication ["A primer on deep learning in genomics"](https://www.nature.com/articles/s41588-018-0295-5) but use the [PyTorch](https://pytorch.org) and [fastai](https://www.fast.ai) library. + +**Notebooks** +* [Basic model with PyTorch](https://nbviewer.jupyter.org/github/MicPie/genomics/blob/master/DL_Genomics_v8_basic-pytorch.ipynb) +* [Basic model with PyTorch and fastai](https://nbviewer.jupyter.org/github/MicPie/genomics/blob/master/DL_Genomics_v8_basic-fastai.ipynb) +* [Custom ResNet model with PyTorch and fastai](https://nbviewer.jupyter.org/github/MicPie/genomics/blob/master/DL_Genomics_v8_resnet-fastai.ipynb)