--- a +++ b/gwas/gcta/README.txt @@ -0,0 +1,36 @@ +PROGRAM: GCTA + +DESCRIPTION: Genome-wide Complex Trait Analysis + +AUTHOR: Jian Yang, Hong Lee, Mike Goddard, Zhili Zheng, Jian Zeng, Zhihong Zhu, +Andrew Bakshi, Robert Marie and Peter Visscher + +CONTACT: jian.yang@uq.edu.au + +2010-2017 + +The binary are released under MIT License. As the license of the dependency packages, +you shall turn to the licenses for the usage other than academic. + +DOCUMENTATION: http://cnsgenomics.com/software/gcta/ + +INSTALLATION: When you have downloaded a zip or gzipped archive with an +executable binary, no installation is necessary. NOTE: If there is a +bin folder, you should put all files in that folder all together, copy +gcta64 out only will not work. + +USAGE: Type "gcta64" or "./gcta64" from the command line followed by the +options of choice (see documentation) NOTE: you probably need to run +"chmod a+x gcta" to get the correct permission to execute the program. + +EXAMPLE DATA: Four example files test.bed, test.bim, test.fam and test.phen +are included in the distribution; for example, once GCTA is installed try running: + + gcta64 --bfile test --make-grm --out test + + gcta64 --reml --grm test --pheno test.phen --out test + + etc... + +In Mac or Windows version, the example files locates in the parent folder of gcta64. +