PROGRAM: GCTA
DESCRIPTION: Genome-wide Complex Trait Analysis
AUTHOR: Jian Yang, Hong Lee, Mike Goddard, Zhili Zheng, Jian Zeng, Zhihong Zhu,
Andrew Bakshi, Robert Marie and Peter Visscher
CONTACT: jian.yang@uq.edu.au
2010-2017
The binary are released under MIT License. As the license of the dependency packages,
you shall turn to the licenses for the usage other than academic.
DOCUMENTATION: http://cnsgenomics.com/software/gcta/
INSTALLATION: When you have downloaded a zip or gzipped archive with an
executable binary, no installation is necessary. NOTE: If there is a
bin folder, you should put all files in that folder all together, copy
gcta64 out only will not work.
USAGE: Type "gcta64" or "./gcta64" from the command line followed by the
options of choice (see documentation) NOTE: you probably need to run
"chmod a+x gcta" to get the correct permission to execute the program.
EXAMPLE DATA: Four example files test.bed, test.bim, test.fam and test.phen
are included in the distribution; for example, once GCTA is installed try running:
gcta64 --bfile test --make-grm --out test
gcta64 --reml --grm test --pheno test.phen --out test
etc...
In Mac or Windows version, the example files locates in the parent folder of gcta64.