<h2 id="usage">Command-Line Interface (CLI) Usage

</h2>

DNAnalyzer uses CLI arguments instead of `stdin`. For example, you can do:

```

<executable> assets/dna/random/dnalong.fa --amino=ser

```

or

```

<executable> assets/dna/random/dnalong.fa --amino=ser --min=0 --max=100

```

Help message (--help):

```

Usage: DNAnalyzer [-hrV] --amino=<aminoAcid> [--find=<proteinFile>]

                  [--max=<maxCount>] [--min=<minCount>] DNA

A program to analyze DNA sequences.

      DNA                    The FASTA file to be analyzed.

      --amino=<aminoAcid>    The amino acid representing the start of a gene.

      --find=<proteinFile>   The DNA sequence to be found within the FASTA file.

  -h, --help                 Show this help message and exit.

      --max=<maxCount>       The maximum count of the reading frame.

      --min=<minCount>       The minimum count of the reading frame.

  -r, --reverse              Reverse the DNA sequence before processing.

  -V, --version              Print version information and exit.

  ```