Command-Line Interface (CLI) Usage

DNAnalyzer uses CLI arguments instead of stdin. For example, you can do:

<executable> assets/dna/random/dnalong.fa --amino=ser

or

<executable> assets/dna/random/dnalong.fa --amino=ser --min=0 --max=100

Help message (--help):

Usage: DNAnalyzer [-hrV] --amino=<aminoAcid> [--find=<proteinFile>] [--max=<maxCount>] [--min=<minCount>] DNA A program to analyze DNA sequences. DNA The FASTA file to be analyzed. --amino=<aminoAcid> The amino acid representing the start of a gene. --find=<proteinFile> The DNA sequence to be found within the FASTA file. -h, --help Show this help message and exit. --max=<maxCount> The maximum count of the reading frame. --min=<minCount> The minimum count of the reading frame. -r, --reverse Reverse the DNA sequence before processing. -V, --version Print version information and exit.