--- a +++ b/exseek/templates/igv/config/genome.yaml @@ -0,0 +1,40 @@ +options: + genome: hg38 + reference: + id: hg38 + name: hg38 + fastaURL: genome/hg38/fasta/genome.fa + indexURL: genome/hg38/fasta/genome.fa.fai + cytobandURL: genome/hg38/igv/cytoBandIdeo.txt + search: + type: json + url: 'locus?genome=$GENOME$&name=$FEATURE$' + coords: 0 + chromosomeField: chromosome + startField: start + endField: end + geneField: gene + snpField: snp +tracks: + GENCODE_V27: + name: GENCODE_V27 + type: annotation + format: bed + url: genome/hg38/bed/gencode.bed + indexURL: genome/hg38/bed/gencode.bed.idx + displayMode: "EXPANDED" + searchable: true + visibilityWindow: 300000000 + height: 100 + show: true + long_RNA_gene: + name: long_RNA_gene + type: annotation + format: bed + url: genome/hg38/bed/long_RNA.gene.bed + indexURL: genome/hg38/bed/long_RNA.gene.bed.idx + displayMode: "EXPANDED" + searchable: true + visibilityWindow: 300000000 + height: 100 + show: true \ No newline at end of file