[4c33d4]: / exseek / templates / igv / config / genome.yaml

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options:
genome: hg38
reference:
id: hg38
name: hg38
fastaURL: genome/hg38/fasta/genome.fa
indexURL: genome/hg38/fasta/genome.fa.fai
cytobandURL: genome/hg38/igv/cytoBandIdeo.txt
search:
type: json
url: 'locus?genome=$GENOME$&name=$FEATURE$'
coords: 0
chromosomeField: chromosome
startField: start
endField: end
geneField: gene
snpField: snp
tracks:
GENCODE_V27:
name: GENCODE_V27
type: annotation
format: bed
url: genome/hg38/bed/gencode.bed
indexURL: genome/hg38/bed/gencode.bed.idx
displayMode: "EXPANDED"
searchable: true
visibilityWindow: 300000000
height: 100
show: true
long_RNA_gene:
name: long_RNA_gene
type: annotation
format: bed
url: genome/hg38/bed/long_RNA.gene.bed
indexURL: genome/hg38/bed/long_RNA.gene.bed.idx
displayMode: "EXPANDED"
searchable: true
visibilityWindow: 300000000
height: 100
show: true