"""

Sphinx configuration.

*********************

"""

# Configuration file for the Sphinx documentation builder.

#

# This file only contains a selection of the most common options. For a full

# list see the documentation:

# https://www.sphinx-doc.org/en/master/usage/configuration.html

# -- Path setup --------------------------------------------------------------

# If extensions (or modules to document with autodoc) are in another directory,

# add these directories to sys.path here. If the directory is relative to the

# documentation root, use os.path.abspath to make it absolute, like shown here.

#

import sphinx_rtd_theme

import os

import sys

sys.path.insert(0, os.path.abspath('../..'))

# -- Project information -----------------------------------------------------

project = 'pathaia'

copyright = '2020, arnaud abreu'

author = 'arnaud abreu'

# The full version, including alpha/beta/rc tags

release = '0.1'

# -- General configuration ---------------------------------------------------

# Add any Sphinx extension module names here, as strings. They can be

# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom

# ones.

extensions = []

extensions.append("sphinx.ext.autodoc")

extensions.append("sphinx.ext.napoleon")

extensions.append("sphinx_autodoc_typehints")

add_module_names = False

# Add any paths that contain templates here, relative to this directory.

templates_path = ['_templates']

# List of patterns, relative to source directory, that match files and

# directories to ignore when looking for source files.

# This pattern also affects html_static_path and html_extra_path.

exclude_patterns = []

autodoc_member_order = 'bysource'

autodoc_mock_imports = ["fastcore",

                        "numpy",

                        "tqdm",

                        "openslide",

                        "cv2",

                        "skimage",

                        "matplotlib",

                        "nptyping",

                        "pandas",

                        "sklearn",

                        "tensorflow"

                        ]

# -- Options for HTML output -------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for

# a list of builtin themes.

#

# html_theme = 'alabaster'

html_theme = 'sphinx_rtd_theme'

html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# Add any paths that contain custom static files (such as style sheets) here,

# relative to this directory. They are copied after the builtin static files,

# so a file named "default.css" will overwrite the builtin "default.css".

html_static_path = ['_static']