--- a +++ b/docs/source/airway.rst @@ -0,0 +1,31 @@ +airway +====== + +.. currentmodule:: inmoose.data.airway + +This module is a port of the R Bioconductor `airway package +<https://bioconductor.org/packages/release/data/experiment/html/airway.html>`_, +version 1.23.0. + +This module provides an :class:`AnnData` object of read counts in +genes for an RNA-Seq experiment on four human airway smooth muscle cell lines +treated with dexamethasone. Details on the gene model and read counting +procedure are provided in the `R package vignette +<https://bioconductor.org/packages/release/data/experiment/vignettes/airway/inst/doc/airway.html>`. +The original publication for the data is [Himes2014]_. + +Code documentation +------------------ + +.. autofunction:: airway + +References +---------- + +.. [Himes2014] B.E. Himes, X. Jiang, P. Wagner, R. Hu, Q. Wang, B. Klanderman, + R.M. Whitaker, Q. Duan, J. Lasky-Su, C. Nikolos, W. Jester, M. Johnson, R. + Panettieri Jr, K.G. Tantisira, S.T. Weiss, Q. Lu. 2014. RNA-Seq Transcriptome + Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that + Modulates Cytokine Function in Airway Smooth Muscle Cells. *PLoS One*. + 9(6):e99625. :doi:`10.1371/journal.pone.0099625`. +