airway

This module is a port of the R Bioconductor airway package, version 1.23.0.

This module provides an :class:`AnnData` object of read counts in genes for an RNA-Seq experiment on four human airway smooth muscle cell lines treated with dexamethasone. Details on the gene model and read counting procedure are provided in the R package vignette <https://bioconductor.org/packages/release/data/experiment/vignettes/airway/inst/doc/airway.html>. The original publication for the data is [Himes2014].

Code documentation

References

[Himes2014]

B.E. Himes, X. Jiang, P. Wagner, R. Hu, Q. Wang, B. Klanderman, R.M. Whitaker, Q. Duan, J. Lasky-Su, C. Nikolos, W. Jester, M. Johnson, R. Panettieri Jr, K.G. Tantisira, S.T. Weiss, Q. Lu. 2014. RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells. PLoS One. 9(6):e99625. :doi:`10.1371/journal.pone.0099625`.