airway

======

.. currentmodule:: inmoose.data.airway

This module is a port of the R Bioconductor `airway package

<https://bioconductor.org/packages/release/data/experiment/html/airway.html>`_,

version 1.23.0.

This module provides an :class:`AnnData` object of read counts in

genes for an RNA-Seq experiment on four human airway smooth muscle cell lines

treated with dexamethasone.  Details on the gene model and read counting

procedure are provided in the `R package vignette

<https://bioconductor.org/packages/release/data/experiment/vignettes/airway/inst/doc/airway.html>`.

The original publication for the data is [Himes2014]_.

Code documentation

------------------

.. autofunction:: airway

References

----------

.. [Himes2014] B.E. Himes, X. Jiang, P. Wagner, R. Hu, Q. Wang, B. Klanderman,

   R.M. Whitaker, Q. Duan, J. Lasky-Su, C. Nikolos, W. Jester, M. Johnson, R.

   Panettieri Jr, K.G. Tantisira, S.T. Weiss, Q. Lu. 2014. RNA-Seq Transcriptome

   Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that

   Modulates Cytokine Function in Airway Smooth Muscle Cells. *PLoS One*.

   9(6):e99625. :doi:`10.1371/journal.pone.0099625`.