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b/tests/testthat/test-data.R |
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# Testing functions of assay data #### |
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test_that("data", { |
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# get data |
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data("visium_data") |
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# get and set feature types |
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vrMainFeatureType(visium_data) |
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vrMainFeatureType(visium_data, assay = "Assay1") <- "RNA" |
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expect_warning(vrMainFeatureType(visium_data) <- "main") |
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# get data |
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data <- vrData(visium_data, norm = FALSE) |
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data <- vrData(visium_data, norm = TRUE) |
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data <- vrData(visium_data, assay = "Assay1", norm = TRUE) |
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# get data with features |
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data <- vrData(visium_data, features = vrFeatures(visium_data)[1:2], norm = FALSE) |
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expect_error(data <- vrData(visium_data, features = "feature", norm = FALSE)) |
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data <- vrData(visium_data, features = vrFeatures(visium_data)[1:2], norm = TRUE) |
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expect_error(data <- vrData(visium_data, features = "feature", norm = TRUE)) |
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# return |
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expect_equal(1,1L) |
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}) |