Package: MetaNet

Type: Package

Title: Network Analysis for Omics Data

Version: 0.2.5

Authors@R:

    person("Chen", "Peng", email ="pengchen2001@zju.edu.cn", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9449-7606"))

Description: Comprehensive network analysis package.

    Calculate correlation network fastly, accelerate lots of analysis by parallel computing.

    Support for multi-omics data, search sub-nets fluently.

    Handle bigger data, more than 10,000 nodes in each omics.

    Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.

    Provide comprehensive topology indexes calculation, including ecological network stability.

License: GPL-3

Encoding: UTF-8

Roxygen: list(markdown = TRUE)

RoxygenNote: 7.2.3

Depends: 

    R (>= 4.1.0),

    igraph (>= 1.3.5)

LazyData: true

Imports: 

    graphics,

    dplyr,

    ggplot2 (>= 3.2.0),

    ggnewscale,

    ggrepel,

    grDevices,

    magrittr,

    reshape2,

    stats,

    tibble,

    utils,

    pcutils (>= 0.2.6),

    rlang

Suggests:

    pheatmap,

    vegan,

    stringr,

    foreach,

    doSNOW,

    snow,

    knitr,

    rmarkdown,

    prettydoc,

    Hmisc,

    gifski,

    ggraph,

    networkD3,

    ggpmisc,

    ggtree,

    treeio,

    circlize,

    jsonify,

    ggpubr,

    corrplot,

    philentropy,

    spatstat.random,

    spatstat.geom,

    sf

VignetteBuilder: knitr

BugReports: https://github.com/Asa12138/MetaNet/issues

URL: https://github.com/Asa12138/MetaNet

ByteCompile: true

biocViews: DataImport, Network analysis, Omics, Software, Visualization