65 lines (64 with data), 1.6 kB

Package: MetaNet
Type: Package
Title: Network Analysis for Omics Data
Version: 0.2.5
Authors@R:
    person("Chen", "Peng", email ="pengchen2001@zju.edu.cn", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9449-7606"))
Description: Comprehensive network analysis package.
    Calculate correlation network fastly, accelerate lots of analysis by parallel computing.
    Support for multi-omics data, search sub-nets fluently.
    Handle bigger data, more than 10,000 nodes in each omics.
    Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.
    Provide comprehensive topology indexes calculation, including ecological network stability.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: 
    R (>= 4.1.0),
    igraph (>= 1.3.5)
LazyData: true
Imports: 
    graphics,
    dplyr,
    ggplot2 (>= 3.2.0),
    ggnewscale,
    ggrepel,
    grDevices,
    magrittr,
    reshape2,
    stats,
    tibble,
    utils,
    pcutils (>= 0.2.6),
    rlang
Suggests:
    pheatmap,
    vegan,
    stringr,
    foreach,
    doSNOW,
    snow,
    knitr,
    rmarkdown,
    prettydoc,
    Hmisc,
    gifski,
    ggraph,
    networkD3,
    ggpmisc,
    ggtree,
    treeio,
    circlize,
    jsonify,
    ggpubr,
    corrplot,
    philentropy,
    spatstat.random,
    spatstat.geom,
    sf
VignetteBuilder: knitr
BugReports: https://github.com/Asa12138/MetaNet/issues
URL: https://github.com/Asa12138/MetaNet
ByteCompile: true
biocViews: DataImport, Network analysis, Omics, Software, Visualization