--- a +++ b/DESCRIPTION @@ -0,0 +1,64 @@ +Package: MetaNet +Type: Package +Title: Network Analysis for Omics Data +Version: 0.2.5 +Authors@R: + person("Chen", "Peng", email ="pengchen2001@zju.edu.cn", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9449-7606")) +Description: Comprehensive network analysis package. + Calculate correlation network fastly, accelerate lots of analysis by parallel computing. + Support for multi-omics data, search sub-nets fluently. + Handle bigger data, more than 10,000 nodes in each omics. + Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize. + Provide comprehensive topology indexes calculation, including ecological network stability. +License: GPL-3 +Encoding: UTF-8 +Roxygen: list(markdown = TRUE) +RoxygenNote: 7.2.3 +Depends: + R (>= 4.1.0), + igraph (>= 1.3.5) +LazyData: true +Imports: + graphics, + dplyr, + ggplot2 (>= 3.2.0), + ggnewscale, + ggrepel, + grDevices, + magrittr, + reshape2, + stats, + tibble, + utils, + pcutils (>= 0.2.6), + rlang +Suggests: + pheatmap, + vegan, + stringr, + foreach, + doSNOW, + snow, + knitr, + rmarkdown, + prettydoc, + Hmisc, + gifski, + ggraph, + networkD3, + ggpmisc, + ggtree, + treeio, + circlize, + jsonify, + ggpubr, + corrplot, + philentropy, + spatstat.random, + spatstat.geom, + sf +VignetteBuilder: knitr +BugReports: https://github.com/Asa12138/MetaNet/issues +URL: https://github.com/Asa12138/MetaNet +ByteCompile: true +biocViews: DataImport, Network analysis, Omics, Software, Visualization