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/softwares_database/fastp.txt
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| a | b/softwares_database/fastp.txt | ||
|---|---|---|---|
| 1 | 1. fastp installation |
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| 2 | mamba install -c bioconda fastp -y |
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| 3 | |||
| 4 | 2. Use fastp for rawdata quality control, filtering and statistics |
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| 5 | #1 PE |
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| 6 | fastp -i <path to read1 input file> -o <path to read1 output file> -I <path to read2 input file> -O <path to read2 output file> |
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| 7 | |||
| 8 | #2 SE |
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| 9 | fastp -i <path to input file> -o <path to output file> |