[89883a]: / eval.py

Download this file

128 lines (103 with data), 3.7 kB

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
import os
import cv2
import numpy as np
import pandas as pd
from glob import glob
from tqdm import tqdm
import tensorflow as tf
from tensorflow.keras.utils import CustomObjectScope
from sklearn.metrics import (
accuracy_score,
f1_score,
jaccard_score,
precision_score,
recall_score,
)
from metrics import dice_loss, dice_coef, iou
from train import load_data
IMG_HEIGHT = 512
IMG_WIDTH = 512
""" Creating a directory """
def create_dir(path):
if not os.path.exists(path):
os.makedirs(path)
def save_results(image, mask, y_pred, save_image_path):
## i - m - y
line = np.ones((IMG_HEIGHT, 10, 3)) * 128
""" Mask """
mask = np.expand_dims(mask, axis=-1) ## (512, 512, 1)
mask = np.concatenate([mask, mask, mask], axis=-1) ## (512, 512, 3)
""" Predicted Mask """
y_pred = np.expand_dims(y_pred, axis=-1) ## (512, 512, 1)
y_pred = np.concatenate([y_pred, y_pred, y_pred], axis=-1) ## (512, 512, 3)
y_pred = y_pred * 255
cat_images = np.concatenate([image, line, mask, line, y_pred], axis=1)
cv2.imwrite(save_image_path, cat_images)
if __name__ == "__main__":
"""Seeding"""
SEEDS = 42
np.random.seed(SEEDS)
tf.random.set_seed(SEEDS)
""" Directory for storing files """
create_dir("results")
""" Loading model """
with CustomObjectScope(
{"iou": iou, "dice_coef": dice_coef, "dice_loss": dice_loss}
):
model = tf.keras.models.load_model("files/model.h5")
""" Load the dataset """
test_x = sorted(glob(os.path.join("new_data", "valid", "image", "*")))
test_y = sorted(glob(os.path.join("new_data", "valid", "mask", "*")))
print(f"Test: {len(test_x)} - {len(test_y)}")
""" Evaluation and Prediction """
SCORE = []
for x, y in tqdm(zip(test_x, test_y), total=len(test_x)):
"""Extract the name"""
name = x.split("/")[-1].split(".")[0]
""" Reading the image """
image = cv2.imread(x, cv2.IMREAD_COLOR)
x = image / 255.0
x = np.expand_dims(x, axis=0)
""" Reading the mask """
mask = cv2.imread(y, cv2.IMREAD_GRAYSCALE)
y = mask / 255.0
y = y > 0.5
y = y.astype(np.int32)
""" Prediction """
y_pred = model.predict(x)[0]
y_pred = np.squeeze(y_pred, axis=-1)
y_pred = y_pred > 0.5
y_pred = y_pred.astype(np.int32)
""" Saving the prediction """
save_image_path = f"results/{name}.png"
save_results(image, mask, y_pred, save_image_path)
""" Flatten the array """
y = y.flatten()
y_pred = y_pred.flatten()
""" Calculating the metrics values """
acc_value = accuracy_score(y, y_pred)
f1_value = f1_score(y, y_pred, labels=[0, 1], average="binary", zero_division=1)
jac_value = jaccard_score(
y, y_pred, labels=[0, 1], average="binary", zero_division=1
)
recall_value = recall_score(
y, y_pred, labels=[0, 1], average="binary", zero_division=1
)
precision_value = precision_score(
y, y_pred, labels=[0, 1], average="binary", zero_division=1
)
SCORE.append(
[name, acc_value, f1_value, jac_value, recall_value, precision_value]
)
""" Metrics values """
score = [s[1:] for s in SCORE]
score = np.mean(score, axis=0)
print(f"Accuracy: {score[0]:0.5f}")
print(f"F1: {score[1]:0.5f}")
print(f"Jaccard: {score[2]:0.5f}")
print(f"Recall: {score[3]:0.5f}")
print(f"Precision: {score[4]:0.5f}")
df = pd.DataFrame(
SCORE, columns=["Image", "Accuracy", "F1", "Jaccard", "Recall", "Precision"]
)
df.to_csv("files/score.csv")