[8fb459]: / utils / __pycache__ / strain.cpython-36.pyc

Download this file

26 lines (25 with data), 3.2 kB

3

ï`v
ã@shddlZddlmZddlmZddlmZmZddlm	Z	Gdd„dƒZ
dd	„Zd
d„Zdd
d„Z
dS)éN)Úrotate)Úgaussian_filter)Úinterp1dÚinterp2d)Úcenter_of_massc@s&eZdZdd„Zd
dd„Zdd„Zd	S)ÚMyocardialStraincCs^||_||_t|jƒdkst‚t|jƒdks0t‚|j|jdd…ksHt‚|jddksZt‚dS)Nééééÿÿÿÿ)ÚmaskÚflowÚlenÚshapeÚAssertionError)Úselfrr
©rúP/tf/Dropbox (Partners HealthCare)/ubuntu/docker/repos/DeepStrain/utils/strain.pyÚ__init__	szMyocardialStrain.__init__r
rcCst|j|kƒ\}}}|jj\}}	}
t|j||ƒ|_t|j||ƒ|_tj|jddƒ\}}}
tj	tj
|ƒ|||ƒ\}}}tj	tj
|ƒ|||ƒ\}}}tj	tj
|
ƒ|||ƒ\}}}tj||	|
ddfƒ|_xòt
|ƒD]æ}xàt
|	ƒD]Ô}xÎt
|
ƒD]Â}||||f||||f||||fg||||f||||f||||fg||||f||||f||||fgg}tj|ƒtjdƒ}dtj|j|ƒtjdƒ}|j|||f|7<qèWqÚWqÌW|jdd…dd…dd…ddf|_|j|jdd…dd…dd…dd…dd…fƒ\|_|_dS)Nrr
gà?ér)rrrÚ_roll_to_centerr
Zflow_rotZmask_rotÚnpÚarray_splitÚgradientÚsqueezeÚzerosZE_cartÚrangeÚarrayÚidentityÚmatmulÚTZEzzÚ_convert_to_polarÚErrÚEcc)rÚdxÚdyÚdzZlv_labelÚcxÚcyÚczÚnxÚnyÚnzÚuxÚuyÚuzZUxxZUxyZUxzZUyxZUyyZUyzZUzxZUzyZUzzÚiÚjÚkZUgradÚFÚerrrÚcalculate_strains(&&*$"z!MyocardialStrain.calculate_strainc
Csnt|jdd…Žd}tj|jjƒ}tj|jjƒ}x0t|jjdƒD]}tjtj|ƒƒ}tjtj|ƒƒ}|dd…dd…|ddf|dd…dd…|ddf|dd…dd…|ddf|dd…dd…|ddff\}}	}
}|dd…dd…|f|||||	|||
||7<|dd…dd…|f|||||	|||
||7<qFW||fS)Nrrr
r)	Ú_polar_gridrrrrrÚcosÚdeg2radÚsin)rÚEÚphir"r#r2r7r9ZExxZExyZEyxZEyyrrrr!1slBLz"MyocardialStrain._convert_to_polarN)r
r
r
r)Ú__name__Ú
__module__Ú__qualname__rr5r!rrrrrs

rcCs tj||dd}tj||ddS)Nr)Úaxisr
)rÚroll)ÚxÚrxÚryrrrÚ_rollBsrDcCs6|jdd…\}}t|t|d|ƒt|d|ƒƒS)Nr)rrDÚint)rAr'r(r*r+rrrrFsré€cCsrtjtj|d|d|ƒtj|d|d|ƒƒ\}}tjtj||ƒƒdj}tj|d|ddƒ}||fS)Nré´g:Œ0âŽyE>)rÚmeshgridÚlinspaceÚrad2degÚarctan2r Úsqrt)r*r+rAÚyr;Úrrrrr6Js8r6)rFrF)ÚnumpyrÚ
scipy.ndimagerrÚscipy.interpolaterrZscipy.ndimage.measurementsrrrDrr6rrrrÚ<module>s;