DeepStrain / Git / Diff of /README.md

Models:

tobiasharvey/

DeepStrain

Downloads: 1

Diff of /README.md [4aad23] .. [8fb459]

Switch to unified view



[[paper](https://www.frontiersin.org/articles/10.3389/fcvm.2021.730316/full)] [[installation](https://github.com/moralesq/DeepStrain/tree/main/installation)] [[examples](https://github.com/moralesq/DeepStrain/tree/main/examples)]

<br><br><br><br>

# DeepStrain
...
Data are the slope (95% confidence interval of the slope) and Pearson correlation coefficient (r).

## Application

<p align="center">

    <br>
    <p align="justify">
    The study cohort consisted of 119 participants (35 ± 5 years, 50% male) including the control group with 30 subjects; RFG1 with 39 overweight subjects; RFG2 with 30 hypertensive subjects, including 13 (43%) with additional overweight; RFG3 with 20 T2DM subjects, including 11 (55%) with additional overweight, 1 (5%) with additional hypertension and 8 (40%) with both. Measures of (a) circumferential and (b) radial early-diastolic strain rate (SR) in controls and risk factor groups. Strain results are visualized as mean with 95% confidence interval. Post-hoc test by Bonferroni: * p < 0.05; ** p < 0.01; *** p < 0.001. RFG = risk factor group.
    </p>
    <br><br>
...
- **DeepStrain: A Deep Learning Workflow for the Automated Characterization of Cardiac Mechanics.** [Manuel A. Morales](https://catanalab.martinos.org/lab-members/manuel-a-morales/), [Maaike van den Boomen](https://nguyenlab.mgh.harvard.edu/maaike-van-den-boomen-ms/), [Christopher Nguyen](https://nguyenlab.mgh.harvard.edu/christopher-nguyen-phd-2/), [Jayashree Kalpathy-Cramer](https://www.ccds.io/leadership-team/jayashree-kalpathy-cramer/), [Bruce R. Rosen](https://www.martinos.org/investigator/bruce-rosen/), [Collin M. Stultz](https://mitibmwatsonailab.mit.edu/people/collin-m-stultz/), [David Izquierdo-Garcia](https://catanalab.martinos.org/lab-members/david-izquierdo-garcia/),  [Ciprian Catana](https://catanalab.martinos.org/lab-members/ciprian-catana/). Frontiers in Cardiovascular Medicine, 2021. DOI: https://doi.org/10.3389/fcvm.2021.730316.

- **DeepStrain Evidence of Asymptomatic Left Ventricular Diastolic and Systolic Dysfunction in Young Adults With Cardiac Risk Factors.** [Manuel A. Morales](https://catanalab.martinos.org/lab-members/manuel-a-morales/), Gert J. H. Snel, [Maaike van den Boomen](https://nguyenlab.mgh.harvard.edu/maaike-van-den-boomen-ms/), Ronald J. H. Borra, Vincent M. van Deursen, Riemer H. J. A. Slart, [David Izquierdo-Garcia](https://catanalab.martinos.org/lab-members/david-izquierdo-garcia/), Niek H. J. Prakken,  [Ciprian Catana](https://catanalab.martinos.org/lab-members/ciprian-catana/). Frontiers in Cardiovascular Medicine, 2022. DOI: https://doi.org/10.3389/fcvm.2022.831080

- **Comparison of DeepStrain and Feature Tracking for Cardiac MRI Strain Analysis.** [Manuel A. Morales](https://cardiacmr.hms.harvard.edu/people/manuel-morales-phd), [Julia Cirillo](https://cardiacmr.hms.harvard.edu/people/julia-cirillo), [Kei Nakata](https://cardiacmr.hms.harvard.edu/people/kei-nakata-md-phd), [Selcuk Kucukseymen](https://cardiacmr.hms.harvard.edu/people/selcuk-kucukseymen-md), [Long H. Ngo](https://www.bidmc.org/research/research-by-department/medicine/general-medicine-research/research-faculty/long-h-ngo-phd), [David Izquierdo-Garcia](https://catanalab.martinos.org/lab-members/david-izquierdo-garcia/),  [Ciprian Catana](https://catanalab.martinos.org/lab-members/ciprian-catana/), [Reza Nezafat](https://cardiacmr.hms.harvard.edu/people/reza-nezafat). Journal of Magnetic Resonance Imaging, 2022. DOI:

	a/README.md		b/README.md
1
2	[[paper](https://www.frontiersin.org/articles/10.3389/fcvm.2021.730316/full)] [[installation](https://github.com/moralesq/DeepStrain/tree/main/installation)] [[examples](https://github.com/moralesq/DeepStrain/tree/main/examples)]	1	[[paper](https://www.frontiersin.org/articles/10.3389/fcvm.2021.730316/full)] [[installation](https://github.com/moralesq/DeepStrain/tree/main/installation)] [[examples](https://github.com/moralesq/DeepStrain/tree/main/examples)]
3		2
4	<br><br><br><br>	3	<br><br><br><br>
5		4
6	# DeepStrain	5	# DeepStrain
	...		...
61	Data are the slope (95% confidence interval of the slope) and Pearson correlation coefficient (r).	60	Data are the slope (95% confidence interval of the slope) and Pearson correlation coefficient (r).
62		61
63	## Application	62	## Application
64		63
65	<p align="center">	64	<p align="center">
66	<img src='imgs/figure_4_Global_SRe.jpg' width=840>
67	<br>	65	<br>
68	<p align="justify">	66	<p align="justify">
69	The study cohort consisted of 119 participants (35 ± 5 years, 50% male) including the control group with 30 subjects; RFG1 with 39 overweight subjects; RFG2 with 30 hypertensive subjects, including 13 (43%) with additional overweight; RFG3 with 20 T2DM subjects, including 11 (55%) with additional overweight, 1 (5%) with additional hypertension and 8 (40%) with both. Measures of (a) circumferential and (b) radial early-diastolic strain rate (SR) in controls and risk factor groups. Strain results are visualized as mean with 95% confidence interval. Post-hoc test by Bonferroni: * p < 0.05; p < 0.01; * p < 0.001. RFG = risk factor group.	67	The study cohort consisted of 119 participants (35 ± 5 years, 50% male) including the control group with 30 subjects; RFG1 with 39 overweight subjects; RFG2 with 30 hypertensive subjects, including 13 (43%) with additional overweight; RFG3 with 20 T2DM subjects, including 11 (55%) with additional overweight, 1 (5%) with additional hypertension and 8 (40%) with both. Measures of (a) circumferential and (b) radial early-diastolic strain rate (SR) in controls and risk factor groups. Strain results are visualized as mean with 95% confidence interval. Post-hoc test by Bonferroni: * p < 0.05; p < 0.01; * p < 0.001. RFG = risk factor group.
70	</p>	68	</p>
71	<br><br>	69	<br><br>
	...		...
79	- DeepStrain: A Deep Learning Workflow for the Automated Characterization of Cardiac Mechanics. [Manuel A. Morales](https://catanalab.martinos.org/lab-members/manuel-a-morales/), [Maaike van den Boomen](https://nguyenlab.mgh.harvard.edu/maaike-van-den-boomen-ms/), [Christopher Nguyen](https://nguyenlab.mgh.harvard.edu/christopher-nguyen-phd-2/), [Jayashree Kalpathy-Cramer](https://www.ccds.io/leadership-team/jayashree-kalpathy-cramer/), [Bruce R. Rosen](https://www.martinos.org/investigator/bruce-rosen/), [Collin M. Stultz](https://mitibmwatsonailab.mit.edu/people/collin-m-stultz/), [David Izquierdo-Garcia](https://catanalab.martinos.org/lab-members/david-izquierdo-garcia/), [Ciprian Catana](https://catanalab.martinos.org/lab-members/ciprian-catana/). Frontiers in Cardiovascular Medicine, 2021. DOI: https://doi.org/10.3389/fcvm.2021.730316.	77	- DeepStrain: A Deep Learning Workflow for the Automated Characterization of Cardiac Mechanics. [Manuel A. Morales](https://catanalab.martinos.org/lab-members/manuel-a-morales/), [Maaike van den Boomen](https://nguyenlab.mgh.harvard.edu/maaike-van-den-boomen-ms/), [Christopher Nguyen](https://nguyenlab.mgh.harvard.edu/christopher-nguyen-phd-2/), [Jayashree Kalpathy-Cramer](https://www.ccds.io/leadership-team/jayashree-kalpathy-cramer/), [Bruce R. Rosen](https://www.martinos.org/investigator/bruce-rosen/), [Collin M. Stultz](https://mitibmwatsonailab.mit.edu/people/collin-m-stultz/), [David Izquierdo-Garcia](https://catanalab.martinos.org/lab-members/david-izquierdo-garcia/), [Ciprian Catana](https://catanalab.martinos.org/lab-members/ciprian-catana/). Frontiers in Cardiovascular Medicine, 2021. DOI: https://doi.org/10.3389/fcvm.2021.730316.
80		78
81	- DeepStrain Evidence of Asymptomatic Left Ventricular Diastolic and Systolic Dysfunction in Young Adults With Cardiac Risk Factors. [Manuel A. Morales](https://catanalab.martinos.org/lab-members/manuel-a-morales/), Gert J. H. Snel, [Maaike van den Boomen](https://nguyenlab.mgh.harvard.edu/maaike-van-den-boomen-ms/), Ronald J. H. Borra, Vincent M. van Deursen, Riemer H. J. A. Slart, [David Izquierdo-Garcia](https://catanalab.martinos.org/lab-members/david-izquierdo-garcia/), Niek H. J. Prakken, [Ciprian Catana](https://catanalab.martinos.org/lab-members/ciprian-catana/). Frontiers in Cardiovascular Medicine, 2022. DOI: https://doi.org/10.3389/fcvm.2022.831080	79	- DeepStrain Evidence of Asymptomatic Left Ventricular Diastolic and Systolic Dysfunction in Young Adults With Cardiac Risk Factors. [Manuel A. Morales](https://catanalab.martinos.org/lab-members/manuel-a-morales/), Gert J. H. Snel, [Maaike van den Boomen](https://nguyenlab.mgh.harvard.edu/maaike-van-den-boomen-ms/), Ronald J. H. Borra, Vincent M. van Deursen, Riemer H. J. A. Slart, [David Izquierdo-Garcia](https://catanalab.martinos.org/lab-members/david-izquierdo-garcia/), Niek H. J. Prakken, [Ciprian Catana](https://catanalab.martinos.org/lab-members/ciprian-catana/). Frontiers in Cardiovascular Medicine, 2022. DOI: https://doi.org/10.3389/fcvm.2022.831080
82		80
83	- Comparison of DeepStrain and Feature Tracking for Cardiac MRI Strain Analysis. [Manuel A. Morales](https://cardiacmr.hms.harvard.edu/people/manuel-morales-phd), [Julia Cirillo](https://cardiacmr.hms.harvard.edu/people/julia-cirillo), [Kei Nakata](https://cardiacmr.hms.harvard.edu/people/kei-nakata-md-phd), [Selcuk Kucukseymen](https://cardiacmr.hms.harvard.edu/people/selcuk-kucukseymen-md), [Long H. Ngo](https://www.bidmc.org/research/research-by-department/medicine/general-medicine-research/research-faculty/long-h-ngo-phd), [David Izquierdo-Garcia](https://catanalab.martinos.org/lab-members/david-izquierdo-garcia/), [Ciprian Catana](https://catanalab.martinos.org/lab-members/ciprian-catana/), [Reza Nezafat](https://cardiacmr.hms.harvard.edu/people/reza-nezafat). Journal of Magnetic Resonance Imaging, 2022. DOI:	81	- Comparison of DeepStrain and Feature Tracking for Cardiac MRI Strain Analysis. [Manuel A. Morales](https://cardiacmr.hms.harvard.edu/people/manuel-morales-phd), [Julia Cirillo](https://cardiacmr.hms.harvard.edu/people/julia-cirillo), [Kei Nakata](https://cardiacmr.hms.harvard.edu/people/kei-nakata-md-phd), [Selcuk Kucukseymen](https://cardiacmr.hms.harvard.edu/people/selcuk-kucukseymen-md), [Long H. Ngo](https://www.bidmc.org/research/research-by-department/medicine/general-medicine-research/research-faculty/long-h-ngo-phd), [David Izquierdo-Garcia](https://catanalab.martinos.org/lab-members/david-izquierdo-garcia/), [Ciprian Catana](https://catanalab.martinos.org/lab-members/ciprian-catana/), [Reza Nezafat](https://cardiacmr.hms.harvard.edu/people/reza-nezafat). Journal of Magnetic Resonance Imaging, 2022. DOI: