{

 "cells": [

  {

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   "execution_count": 2,

   "id": "4f4fc2ef-3ba9-4355-9221-be8af5ddf7ba",

   "metadata": {},

   "outputs": [],

   "source": [

    "import sys\n",

    "sys.path.append('../')\n",

    "\n",

    "import os\n",

    "import numpy as np\n",

    "\n",

    "from utils.metrics import compute_TRE"

   ]

  },

  {

   "cell_type": "markdown",

   "id": "d3b26f99-75c6-4638-ab91-991f7e39c9c5",

   "metadata": {},

   "source": [

    "From the dataset, the displacement is 25.90 (11.57) for COPD1"

   ]

  },

  {

   "cell_type": "code",

   "execution_count": 6,

   "id": "1d2a696b-ae45-452d-8322-f054a18eb428",

   "metadata": {},

   "outputs": [

    {

     "name": "stdout",

     "output_type": "stream",

     "text": [

      "26.33 11.42\n"

     ]

    }

   ],

   "source": [

    "fixed_points_file = '../rawData/copd1/copd1_300_iBH_xyz_r1.txt'\n",

    "moving_points_file = '../rawData/copd1/copd1_300_eBH_xyz_r1.txt'\n",

    "voxel_size = (0.625, 0.625, 2.5)\n",

    "\n",

    "TRE_mean, TRE_std = compute_TRE(fixed_points_file, moving_points_file, voxel_size)\n",

    "\n",

    "print(TRE_mean, TRE_std)"

   ]

  },

  {

   "cell_type": "code",

   "execution_count": 2,

   "metadata": {},

   "outputs": [

    {

     "name": "stdout",

     "output_type": "stream",

     "text": [

      "26.33 11.42\n"

     ]

    }

   ],

   "source": [

    "fixed_points_file = '../rawData/copd1/copd1_300_iBH_xyz_r1.txt'\n",

    "moving_points_file = '../rawData/copd1/copd1_300_eBH_xyz_r1.txt'\n",

    "voxel_size = (0.625, 0.625, 2.5)\n",

    "\n",

    "TRE_mean, TRE_std = compute_TRE(moving_points_file, fixed_points_file, voxel_size)\n",

    "\n",

    "print(TRE_mean, TRE_std)"

   ]

  },

  {

   "cell_type": "markdown",

   "id": "0e69accd-7a87-4c06-88c9-de0df055c2fb",

   "metadata": {},

   "source": [

    "From the dataset, the displacement is 21.77 (6.46) for COPD2"

   ]

  },

  {

   "cell_type": "code",

   "execution_count": 3,

   "id": "ead490b2-d530-431d-ba2f-de58dc5ce5ea",

   "metadata": {},

   "outputs": [

    {

     "name": "stdout",

     "output_type": "stream",

     "text": [

      "21.79 6.46\n"

     ]

    }

   ],

   "source": [

    "fixed_points_file = '../rawData/copd2/copd2_300_iBH_xyz_r1.txt'\n",

    "moving_points_file = '../rawData/copd2/copd2_300_eBH_xyz_r1.txt'\n",

    "voxel_size = (0.645, 0.645, 2.5)\n",

    "\n",

    "TRE_mean, TRE_std = compute_TRE(fixed_points_file, moving_points_file, voxel_size)\n",

    "\n",

    "print(TRE_mean, TRE_std)"

   ]

  },

  {

   "cell_type": "markdown",

   "id": "1621e87c-6e39-4932-bbf5-956c409dc882",

   "metadata": {},

   "source": [

    "From the dataset, the displacement is 12.29 (6.39) for COPD3"

   ]

  },

  {

   "cell_type": "code",

   "execution_count": 40,

   "id": "82d039ef-19b4-4561-a6c5-2ea3d2f652fc",

   "metadata": {},

   "outputs": [

    {

     "name": "stdout",

     "output_type": "stream",

     "text": [

      "12.64 6.38\n"

     ]

    }

   ],

   "source": [

    "fixed_points_file = '../rawData/copd3/copd3_300_iBH_xyz_r1.txt'\n",

    "moving_points_file = '../rawData/copd3/copd3_300_eBH_xyz_r1.txt'\n",

    "voxel_size = (0.652, 0.652, 2.5)\n",

    "\n",

    "TRE_mean, TRE_std = compute_TRE(fixed_points_file, moving_points_file, voxel_size)\n",

    "\n",

    "print(TRE_mean, TRE_std)"

   ]

  },

  {

   "cell_type": "markdown",

   "id": "5c890035-6dd5-4138-841b-2ac65f4cb0aa",

   "metadata": {},

   "source": [

    "From the dataset, the displacement is 30.90 (13.49) for COPD4"

   ]

  },

  {

   "cell_type": "code",

   "execution_count": 39,

   "id": "d9266991-1dae-4cce-9a98-044444e75fa5",

   "metadata": {},

   "outputs": [

    {

     "name": "stdout",

     "output_type": "stream",

     "text": [

      "29.58 12.92\n"

     ]

    }

   ],

   "source": [

    "fixed_points_file = '../rawData/copd4/copd4_300_iBH_xyz_r1.txt'\n",

    "moving_points_file = '../rawData/copd4/copd4_300_eBH_xyz_r1.txt'\n",

    "voxel_size = (0.590, 0.590, 2.5)\n",

    "\n",

    "TRE_mean, TRE_std = compute_TRE(fixed_points_file, moving_points_file, voxel_size)\n",

    "\n",

    "print(TRE_mean, TRE_std)"

   ]

  }

 ],

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