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Models:
Tobias Harvey
tobiasharvey/
COPDgene-CT-registration
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Diff of /elastix-parameters/Par0049/Par0049_stdTL-advanced.txt [000000] .. [6fe801]

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a b/elastix-parameters/Par0049/Par0049_stdTL-advanced.txt 

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// ********** Image Types





  
  

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(FixedInternalImagePixelType "float")





  
  

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(FixedImageDimension 3)





  
  

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(MovingInternalImagePixelType "float")





  
  

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(MovingImageDimension 3)





  
  

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// ********** Components





  
  

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(Registration "MultiResolutionRegistration")





  
  

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(FixedImagePyramid "FixedRecursiveImagePyramid")





  
  

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(MovingImagePyramid "MovingRecursiveImagePyramid")





  
  

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(Interpolator "BSplineInterpolator")





  
  

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(Metric "AdvancedNormalizedCorrelation")





  
  

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(Optimizer "AdaptiveStochasticGradientDescent")





  
  

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(ResampleInterpolator "FinalBSplineInterpolator")





  
  

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(Resampler "DefaultResampler")





  
  

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(Transform "BSplineTransform")





  
  

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// ********** Pyramid





  
  

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// Total number of resolutions





  
  

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(NumberOfResolutions 1)





  
  

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(ImagePyramidSchedule 1 1 1)





  
  

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// ********** Transform





  
  

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(FinalGridSpacingInPhysicalUnits 5.0 5.0 5.0)





  
  

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(GridSpacingSchedule 1.0)





  
  

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(HowToCombineTransforms "Compose")





  
  

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// ********** Optimizer





  
  

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// Maximum number of iterations in each resolution level:





  
  

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(MaximumNumberOfIterations 500)





  
  

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(AutomaticParameterEstimation "true")





  
  

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(UseAdaptiveStepSizes "true")





  
  

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// ********** Metric





  
  

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// Just using the default values for the NC metric





  
  

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// ********** Several





  
  

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(WriteTransformParametersEachIteration "false")





  
  

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(WriteTransformParametersEachResolution "true")





  
  

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(WriteResultImageAfterEachResolution "false")





  
  

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(WritePyramidImagesAfterEachResolution "false")





  
  

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(WriteResultImage "false")





  
  

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(ShowExactMetricValue "false")





  
  

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(ErodeMask "false")





  
  

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(UseDirectionCosines "true")





  
  

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// ********** ImageSampler





  
  

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//Number of spatial samples used to compute the mutual information in each resolution level:





  
  

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(ImageSampler "RandomCoordinate")





  
  

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(NumberOfSpatialSamples 2000)





  
  

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(NewSamplesEveryIteration "true")





  
  

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(UseRandomSampleRegion "false")





  
  

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(SampleRegionSize 50.0 50.0 50.0)





  
  

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(MaximumNumberOfSamplingAttempts 50)





  
  

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(ResultImageFormat "mha")





  
  

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// ********** Interpolator and Resampler





  
  

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//Order of B-Spline interpolation used in each resolution level:





  
  

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(BSplineInterpolationOrder 1)





  
  

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//Order of B-Spline interpolation used for applying the final deformation:





  
  

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(FinalBSplineInterpolationOrder 3)





  
  

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//Default pixel value for pixels that come from outside the picture:





  
  

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(DefaultPixelValue -2048)





  
  

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