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b/elastix-parameters/Par0049/Par0049_stdT-advanced.txt |
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// ********** Image Types |
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(FixedInternalImagePixelType "float") |
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(FixedImageDimension 3) |
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(MovingInternalImagePixelType "float") |
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(MovingImageDimension 3) |
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// ********** Components |
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(Registration "MultiResolutionRegistration") |
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(FixedImagePyramid "FixedRecursiveImagePyramid") |
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(MovingImagePyramid "MovingRecursiveImagePyramid") |
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(Interpolator "BSplineInterpolator") |
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(Metric "AdvancedNormalizedCorrelation") |
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(Optimizer "AdaptiveStochasticGradientDescent") |
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(ResampleInterpolator "FinalBSplineInterpolator") |
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(Resampler "DefaultResampler") |
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(Transform "BSplineTransform") |
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// ********** Pyramid |
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// Total number of resolutions |
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(NumberOfResolutions 6) |
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(ImagePyramidSchedule 16 16 16 8 8 8 4 4 4 2 2 2 1 1 1 1 1 1) |
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// ********** Transform |
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(FinalGridSpacingInPhysicalUnits 5.0 5.0 5.0) |
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(GridSpacingSchedule 16.0 16.0 8.0 4.0 2.0 1.0) |
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(HowToCombineTransforms "Compose") |
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// ********** Optimizer |
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// Maximum number of iterations in each resolution level: |
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(MaximumNumberOfIterations 1000) |
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(AutomaticParameterEstimation "true") |
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(UseAdaptiveStepSizes "true") |
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// ********** Metric |
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// Just using the default values for the NC metric |
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// ********** Several |
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(WriteTransformParametersEachIteration "false") |
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(WriteTransformParametersEachResolution "true") |
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(WriteResultImageAfterEachResolution "false") |
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(WritePyramidImagesAfterEachResolution "false") |
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// (WriteResultImage "false") |
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(WriteResultImage "true") |
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(ShowExactMetricValue "false") |
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(ErodeMask "false") |
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(UseDirectionCosines "true") |
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// ********** ImageSampler |
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//Number of spatial samples used to compute the mutual information in each resolution level: |
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(ImageSampler "RandomCoordinate") |
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(NumberOfSpatialSamples 2000) |
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(NewSamplesEveryIteration "true") |
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(UseRandomSampleRegion "false") |
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(SampleRegionSize 50.0 50.0 50.0) |
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(MaximumNumberOfSamplingAttempts 50) |
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// (ResultImageFormat "mha") |
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// ********** Interpolator and Resampler |
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//Order of B-Spline interpolation used in each resolution level: |
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(BSplineInterpolationOrder 1) |
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//Order of B-Spline interpolation used for applying the final deformation: |
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(FinalBSplineInterpolationOrder 3) |
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//Default pixel value for pixels that come from outside the picture: |
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(DefaultPixelValue -2048) |
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(ResultImageFormat "nii") |
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(ResultImagePixelType "float") |
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(ResultImageName "result_image") |
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