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+# Par0011 - elastix
+
+###  Registration Description
+intrapatient (sometimes intra-sheep); B-spline transformation; normalized correlation	
+
+###  Image data
+
+* 3D chest CT
+* Lung
+* 20 scans
+* Voxel size mostly 0.7x0.7x~0.7 mm, four scans with thicker slices 1.25, 1.5, 2, 2.5 mm.
+* Dimension: on average about 400 x 300 x 350
+
+
+Screen shots:
+
+![alt-text](Par0011screenshot1.jpg)
+
+![alt-text](Par0011screenshot2.jpg)
+
+###  Application
+
+Registration of intra-patient pulmonary CT scans for the EMPIRE10 challenge at MICCAI. Sometimes sheep lungs.
+
+For more information visit the [EMPIRE10 website][1].
+
+The results of the challenge can be found [here][2].
+
+###  Registration settings
+
+`elastix` version: 4.301
+
+Command line calls:
+
+
+    elastix -f scans/x_Fixed.mhd  -m scans/x_Moving.mhd  -p parameters.Par0011.affine.txt   -out outDir1_x
+
+    elastix -f scans/x_Fixed2.mhd -m scans/x_Moving2.mhd -p parameters.Par0011.bspline1.txt -out outDir2_x
+        -t0 outDir1_x/TransformParameters.0.txt
+
+    elastix -f scans/x_Fixed2.mhd -m scans/x_Moving2.mhd -p parameters.Par0011.bspline2.txt -out outDir3_x
+        -t0 outDir2_x/TransformParameters.0.txt -fMask lungMasks/x_Fixed.mhd
+
+
+where `x` refers to the patient number (01 - 20), and `Fixed2` and `Moving2` to slightly pre-processed versions of the fixed and moving image.
+
+###  Published in
+
+These registration are described in the publication:
+
+Marius Staring, Stefan Klein, Johan H.C. Reiber, Wiro J. Niessen and Berend C. Stoel, Pulmonary Image Registration With `elastix` Using a Standard Intensity-Based Algorithm, EMPIRE10 workshop at MICCAI.
+
+###  References
+
+[1]: http://empire10.isi.uu.nl/index.php
+[2]: http://empire10.isi.uu.nl/mainResults.php