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b/mimicsql/evaluation/overall_evaluation.ipynb |
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{ |
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"cells": [ |
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{ |
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"cell_type": "code", |
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"execution_count": null, |
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"metadata": {}, |
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"outputs": [], |
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"source": [ |
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"import re\n", |
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"import csv\n", |
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"import pandas\n", |
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"import sqlite3\n", |
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"import random\n", |
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"import json\n", |
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"import itertools\n", |
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"import numpy as np\n", |
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"from sumeval.metrics.rouge import RougeCalculator\n", |
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"rouge = RougeCalculator(stopwords=False, lang=\"en\")\n", |
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"\n", |
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"from utils import *" |
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] |
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}, |
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{ |
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"cell_type": "code", |
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"execution_count": null, |
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"metadata": {}, |
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"outputs": [], |
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"source": [ |
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"db_file = 'mimic_db/mimic.db'\n", |
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"model = query(db_file)\n", |
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"(db_meta, db_tabs, db_head) = model._load_db(db_file)" |
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] |
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}, |
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{ |
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"cell_type": "code", |
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"execution_count": null, |
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"metadata": {}, |
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"outputs": [], |
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"source": [ |
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"fp = open('mimic_db/lookup.json', 'r')\n", |
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"lookup = json.load(fp)\n", |
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"fp.close()" |
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] |
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}, |
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{ |
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"cell_type": "code", |
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"execution_count": null, |
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"metadata": {}, |
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"outputs": [], |
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"source": [ |
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"headerDic = []\n", |
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"for tb in lookup:\n", |
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" for hd in lookup[tb]:\n", |
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" headerDic.append('.'.join([tb,hd]).lower())\n", |
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"# print(headerDic)" |
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] |
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}, |
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{ |
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"cell_type": "code", |
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"execution_count": null, |
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"metadata": {}, |
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"outputs": [], |
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"source": [ |
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"fp = open('generated_sql/output.json', 'r')\n", |
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"cnt = 0\n", |
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"sql_rec = []\n", |
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"for line in fp:\n", |
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" line = json.loads(line)\n", |
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" pred = re.split('<stop>', line['sql_pred'])[0]\n", |
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" ttt = line['sql_gold']\n", |
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"\n", |
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"# print(pred)\n", |
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" predArr = re.split(\"where\", pred)\n", |
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" predAgg = re.split(\"\\s\", predArr[0])\n", |
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" predAgg = list(filter(None, predAgg))\n", |
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" predAgg2 = []\n", |
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" for k in range(len(predAgg)-1):\n", |
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" if predAgg[k] in headerDic and predAgg[k+1] in headerDic:\n", |
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" predAgg2.append(predAgg[k] + ',')\n", |
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" else:\n", |
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" predAgg2.append(predAgg[k])\n", |
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" predAgg2.append(predAgg[-1])\n", |
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" predAgg = ' '.join(predAgg2)\n", |
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" \n", |
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" predCon = re.split(\"and\", predArr[1])\n", |
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" predConNew = []\n", |
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" k = 0\n", |
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" while k < len(predCon):\n", |
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" if \"=\" in predCon[k] or \"<\" in predCon[k] or \">\" in predCon[k]:\n", |
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" predConNew.append(predCon[k])\n", |
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" else:\n", |
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" predConNew[-1] += \" and \" + predCon[k]\n", |
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" k += 1\n", |
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" k += 1\n", |
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" for k in range(len(predConNew)):\n", |
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" if \"=\" in predConNew[k]:\n", |
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" conOp = \"=\"\n", |
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" if \">\" in predConNew[k]:\n", |
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" conOp = \">\"\n", |
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" if \"<\" in predConNew[k]:\n", |
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" conOp = \"<\"\n", |
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" if \"<=\" in predConNew[k]:\n", |
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" conOp = \"<=\"\n", |
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" if \">=\" in predConNew[k]:\n", |
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" conOp = \">=\"\n", |
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" conVal = re.split(\"=|<|>\", predConNew[k])\n", |
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" conVal = list(filter(None, conVal))\n", |
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" conCol = conVal[0]\n", |
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" conColArr = re.split('\\.|\\s', conCol)\n", |
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" conColArr = list(filter(None, conColArr))\n", |
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" try:\n", |
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" pool_ = lookup[conColArr[0].upper()][conColArr[1].upper()]\n", |
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" except:\n", |
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" sql_rec.append([\"Error\", ttt])\n", |
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" continue\n", |
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" conVal = re.split('\"|\\s', conVal[-1])\n", |
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" conVal = list(filter(None, conVal))\n", |
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" conVal = ' '.join(conVal)\n", |
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" predConNew[k] = conCol + conOp + ' \"' + conVal + '\"'\n", |
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"\n", |
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" pred = predAgg + ' where ' + ' and '.join(predConNew)\n", |
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" pred = re.split(\"\\s\", pred)\n", |
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" pred = list(filter(None, pred))\n", |
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" pred = \" \".join(pred)\n", |
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"# print(pred)\n", |
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"# print(ttt)\n", |
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"# print()\n", |
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" sql_rec.append([pred, ttt])\n", |
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" try:\n", |
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" myres = model.execute_sql(pred).fetchall()\n", |
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" myres = list({k[0]: {} for k in myres if not k[0] == None})\n", |
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" cnt += 1\n", |
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" except:\n", |
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" pass\n", |
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" \n", |
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"fp.close()\n", |
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"print(cnt)" |
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] |
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}, |
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{ |
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"cell_type": "markdown", |
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"metadata": {}, |
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"source": [ |
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"## Logic Form Accuracy:" |
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] |
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}, |
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{ |
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"cell_type": "code", |
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"execution_count": null, |
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"metadata": { |
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"scrolled": true |
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}, |
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"outputs": [], |
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"source": [ |
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"cnt = 0\n", |
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"for itm in sql_rec:\n", |
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" arr = re.split(',|\\s', itm[0].lower())\n", |
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" arr = list(filter(None, arr))\n", |
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" arr = ' '.join(arr)\n", |
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" if arr == itm[1]:\n", |
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" cnt += 1\n", |
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"print('Logic Form Accuracy: {}'.format(cnt/1000))" |
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] |
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}, |
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{ |
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"cell_type": "code", |
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"execution_count": null, |
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"metadata": {}, |
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"outputs": [], |
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"source": [ |
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"fp = open('generated_sql/output.json', 'r')\n", |
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"cnt = 0\n", |
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"lblb = 0\n", |
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"sql_rec2 = []\n", |
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"for line in fp:\n", |
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" line = json.loads(line)\n", |
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" pred = re.split('<stop>', line['sql_pred'])[0]\n", |
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" ttt = line['sql_gold']\n", |
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"\n", |
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"# print(pred)\n", |
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" predArr = re.split(\"where\", pred)\n", |
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" predAgg = re.split(\"\\s\", predArr[0])\n", |
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" predAgg = list(filter(None, predAgg))\n", |
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" predAgg2 = []\n", |
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" for k in range(len(predAgg)-1):\n", |
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" if predAgg[k] in headerDic and predAgg[k+1] in headerDic:\n", |
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" predAgg2.append(predAgg[k] + ',')\n", |
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" else:\n", |
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" predAgg2.append(predAgg[k])\n", |
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" predAgg2.append(predAgg[-1])\n", |
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" predAgg = ' '.join(predAgg2)\n", |
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" \n", |
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" predCon = re.split(\"and\", predArr[1])\n", |
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" predConNew = []\n", |
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" k = 0\n", |
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" while k < len(predCon):\n", |
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" if \"=\" in predCon[k] or \"<\" in predCon[k] or \">\" in predCon[k]:\n", |
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" predConNew.append(predCon[k])\n", |
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" else:\n", |
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" predConNew[-1] += \" and \" + predCon[k]\n", |
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" k += 1\n", |
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" k += 1\n", |
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" for k in range(len(predConNew)):\n", |
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" if \"=\" in predConNew[k]:\n", |
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" conOp = \"=\"\n", |
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" if \">\" in predConNew[k]:\n", |
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" conOp = \">\"\n", |
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" if \"<\" in predConNew[k]:\n", |
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" conOp = \"<\"\n", |
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" if \"<=\" in predConNew[k]:\n", |
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" conOp = \"<=\"\n", |
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" if \">=\" in predConNew[k]:\n", |
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" conOp = \">=\"\n", |
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" conVal = re.split(\"=|<|>\", predConNew[k])\n", |
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" conVal = list(filter(None, conVal))\n", |
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" conCol = conVal[0]\n", |
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" conColArr = re.split('\\.|\\s', conCol)\n", |
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" conColArr = list(filter(None, conColArr))\n", |
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" try:\n", |
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" pool_ = lookup[conColArr[0].upper()][conColArr[1].upper()]\n", |
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" except:\n", |
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" sql_rec2.append([\"Error\", ttt])\n", |
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" lblb = 1\n", |
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" break\n", |
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" conVal = re.split('\"|\\s', conVal[-1])\n", |
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" conVal = list(filter(None, conVal))\n", |
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" conVal = ' '.join(conVal)\n", |
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" try:\n", |
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" int(conVal)\n", |
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" predConNew[k] = conCol + conOp + ' \"' + conVal + '\"'\n", |
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" except:\n", |
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" predConNew[k] = 'lower(' + conCol + ')' + conOp + ' \"' + conVal + '\"'\n", |
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" \n", |
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" if lblb ==1:\n", |
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" lblb = 0\n", |
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" continue\n", |
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" pred = predAgg + ' where ' + ' and '.join(predConNew)\n", |
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" pred = re.split(\"\\s\", pred)\n", |
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" pred = list(filter(None, pred))\n", |
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" pred = \" \".join(pred)\n", |
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"# print(pred)\n", |
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"# print(ttt)\n", |
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"# print()\n", |
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" sql_rec2.append([pred, ttt])\n", |
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" try:\n", |
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" myres = model.execute_sql(pred).fetchall()\n", |
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" myres = list({k[0]: {} for k in myres if not k[0] == None})\n", |
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" cnt += 1\n", |
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" except:\n", |
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" pass\n", |
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" \n", |
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"fp.close()\n", |
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"print(cnt)" |
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] |
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}, |
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{ |
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"cell_type": "code", |
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"execution_count": null, |
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"metadata": {}, |
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"outputs": [], |
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"source": [ |
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"fp = open(\"../mimicsql_data/mimicsql_natural/test.json\", 'r')\n", |
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"cnt = 0\n", |
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"for line in fp:\n", |
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" data = json.loads(line)\n", |
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" sql_rec2[cnt][1] = data['sql']\n", |
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" cnt += 1\n", |
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"fp.close()\n", |
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"print(cnt)" |
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] |
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}, |
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{ |
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"cell_type": "markdown", |
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"metadata": {}, |
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"source": [ |
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"## Execution Accuracy:" |
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] |
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}, |
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{ |
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"cell_type": "code", |
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"execution_count": null, |
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"metadata": {}, |
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"outputs": [], |
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"source": [ |
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"cnt = 0\n", |
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"k = 0\n", |
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"for itm in sql_rec2:\n", |
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" [pred, ttt] = itm\n", |
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" try:\n", |
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" outPred = model.execute_sql(pred).fetchall()\n", |
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" outTtt = model.execute_sql(ttt).fetchall()\n", |
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" except:\n", |
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" k += 1\n", |
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" continue\n", |
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" if outPred == outTtt:\n", |
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" cnt += 1\n", |
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"# else:\n", |
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"# if sql_rec[k][0] == sql_rec[k][1].lower():\n", |
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"# print(pred)\n", |
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"# print(sql_rec[k][0])\n", |
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"# print(ttt.lower())\n", |
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"# print(ttt)\n", |
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"# print(outPred)\n", |
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"# print(outTtt)\n", |
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"# print()\n", |
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" k += 1\n", |
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"print('Execution Accuracy: {}'.format(cnt/1000))" |
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] |
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} |
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], |
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"metadata": { |
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"kernelspec": { |
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"display_name": "Python 3", |
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"language": "python", |
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"name": "python3" |
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}, |
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"language_info": { |
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"codemirror_mode": { |
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"name": "ipython", |
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"version": 3 |
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}, |
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"file_extension": ".py", |
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"mimetype": "text/x-python", |
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"name": "python", |
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"nbconvert_exporter": "python", |
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"pygments_lexer": "ipython3", |
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"version": "3.6.7" |
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} |
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}, |
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"nbformat": 4, |
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"nbformat_minor": 2 |
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} |