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/test-resources/integration/parse.txt
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| a | b/test-resources/integration/parse.txt | ||
|---|---|---|---|
| 1 | John Smith was diagnosed with liver disease while in Chicago. |
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| 2 | John: |
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| 3 | children=[] (list) |
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| 4 | context_similarity=-1 |
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| 5 | cui=-1 |
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| 6 | cui_=-<N>- |
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| 7 | definition_=-<N>- |
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| 8 | dep=7037928807040764755 (int) |
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| 9 | dep_=compound (str) |
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| 10 | detected_name_=-<N>- |
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| 11 | ent=380 (int) |
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| 12 | ent_=PERSON (str) |
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| 13 | ent_iob=3 (int) |
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| 14 | ent_iob_=B (str) |
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| 15 | i=0 (int) |
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| 16 | i_sent=0 (int) |
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| 17 | idx=0 (int) |
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| 18 | is_concept=False |
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| 19 | is_contraction=False (bool) |
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| 20 | is_ent=True (bool) |
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| 21 | is_pronoun=False (bool) |
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| 22 | is_punctuation=False (int) |
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| 23 | is_space=False (bool) |
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| 24 | is_stop=False (bool) |
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| 25 | is_superlative=False (bool) |
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| 26 | is_wh=False (bool) |
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| 27 | lemma_=John (str) |
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| 28 | lexspan=(0, 4) (object) |
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| 29 | norm=John (str) |
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| 30 | norm_len=4 (int) |
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| 31 | pos_=PROPN (str) |
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| 32 | pref_name_=-<N>- |
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| 33 | sent_i=0 (int) |
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| 34 | shape=10887629174180191697 (int) |
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| 35 | shape_=Xxxx (str) |
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| 36 | sub_names=[] |
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| 37 | tag=15794550382381185553 (int) |
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| 38 | tag_=NNP (str) |
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| 39 | tui_descs_= |
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| 40 | tuis=frozenset() |
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| 41 | tuis_= |
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| 42 | Smith: |
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| 43 | children=[0] (list) |
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| 44 | context_similarity=1 |
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| 45 | cui=86418 |
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| 46 | cui_=C0086418 |
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| 47 | definition_=-<N>- |
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| 48 | dep=430 (int) |
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| 49 | dep_=nsubjpass (str) |
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| 50 | detected_name_=smith |
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| 51 | ent=380 (int) |
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| 52 | ent_=PERSON (str) |
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| 53 | ent_iob=1 (int) |
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| 54 | ent_iob_=I (str) |
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| 55 | i=1 (int) |
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| 56 | i_sent=1 (int) |
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| 57 | idx=5 (int) |
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| 58 | is_concept=True |
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| 59 | is_contraction=False (bool) |
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| 60 | is_ent=True (bool) |
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| 61 | is_pronoun=False (bool) |
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| 62 | is_punctuation=False (int) |
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| 63 | is_space=False (bool) |
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| 64 | is_stop=False (bool) |
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| 65 | is_superlative=False (bool) |
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| 66 | is_wh=False (bool) |
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| 67 | lemma_=Smith (str) |
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| 68 | lexspan=(5, 10) (object) |
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| 69 | norm=Smith (str) |
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| 70 | norm_len=5 (int) |
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| 71 | pos_=PROPN (str) |
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| 72 | pref_name_=Homo sapiens |
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| 73 | sent_i=0 (int) |
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| 74 | shape=16072095006890171862 (int) |
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| 75 | shape_=Xxxxx (str) |
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| 76 | sub_names=('allen~james~wilcox', 'allen~j~.~wilcox', 'amar~angela~f', 'baity', 'bandoh', 'bostroem', 'carlos~arvelo', 'cotard', 'danlos', 'dr~parkes~weber', 'ehlers', 'foucauldian', 'francisco~herrera~luque', 'george~bernard~shaw', 'giuseppe~paravicini', 'hahn', 'harris', 'hilsenroth', 'homo~sapien', 'homo~sapiens', 'human', 'humanized~version', 'humans', 'human~being', 'human~beings', 'human~origin', 'human~population', 'jose~luis~vethencourt', 'jose~solane', 'jose~solanes', 'jules~cotard', 'knowles', 'lisandro~alvarado', 'max~clara', 'mmy', 'mmy~s', 'parkes~weber', 'pinel~s', 'schwartz', 'sekula~l~kathleen', 'seligman~and~maier', 'shimokawa', 'single~human~host', 'single~human~hosts', 'smith', 'stiles', 'tchernabogov', 'trump', 'trump~s') |
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| 77 | tag=15794550382381185553 (int) |
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| 78 | tag_=NNP (str) |
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| 79 | tui_descs_=Human |
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| 80 | tuis=('T016',) |
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| 81 | tuis_=T016 |
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| 82 | was: |
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| 83 | children=[] (list) |
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| 84 | context_similarity=-1 |
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| 85 | cui=-1 |
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| 86 | cui_=-<N>- |
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| 87 | definition_=-<N>- |
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| 88 | dep=406 (int) |
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| 89 | dep_=auxpass (str) |
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| 90 | detected_name_=-<N>- |
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| 91 | ent=0 (int) |
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| 92 | ent_=-<N>- (str) |
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| 93 | ent_iob=0 (int) |
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| 94 | ent_iob_=O (str) |
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| 95 | i=2 (int) |
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| 96 | i_sent=2 (int) |
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| 97 | idx=11 (int) |
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| 98 | is_concept=False |
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| 99 | is_contraction=False (bool) |
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| 100 | is_ent=False (bool) |
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| 101 | is_pronoun=False (bool) |
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| 102 | is_punctuation=False (int) |
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| 103 | is_space=False (bool) |
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| 104 | is_stop=True (bool) |
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| 105 | is_superlative=False (bool) |
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| 106 | is_wh=False (bool) |
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| 107 | lemma_=be (str) |
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| 108 | lexspan=(11, 14) (object) |
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| 109 | norm=was (str) |
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| 110 | norm_len=3 (int) |
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| 111 | pos_=AUX (str) |
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| 112 | pref_name_=-<N>- |
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| 113 | sent_i=0 (int) |
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| 114 | shape=4088098365541558500 (int) |
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| 115 | shape_=xxx (str) |
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| 116 | sub_names=[] |
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| 117 | tag=17109001835818727656 (int) |
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| 118 | tag_=VBD (str) |
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| 119 | tui_descs_= |
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| 120 | tuis=frozenset() |
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| 121 | tuis_= |
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| 122 | diagnosed: |
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| 123 | children=[1, 2, 4, 7, 10] (list) |
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| 124 | context_similarity=-1 |
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| 125 | cui=-1 |
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| 126 | cui_=-<N>- |
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| 127 | definition_=-<N>- |
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| 128 | dep=8206900633647566924 (int) |
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| 129 | dep_=ROOT (str) |
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| 130 | detected_name_=-<N>- |
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| 131 | ent=0 (int) |
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| 132 | ent_=-<N>- (str) |
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| 133 | ent_iob=0 (int) |
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| 134 | ent_iob_=O (str) |
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| 135 | i=3 (int) |
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| 136 | i_sent=3 (int) |
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| 137 | idx=15 (int) |
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| 138 | is_concept=False |
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| 139 | is_contraction=False (bool) |
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| 140 | is_ent=False (bool) |
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| 141 | is_pronoun=False (bool) |
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| 142 | is_punctuation=False (int) |
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| 143 | is_space=False (bool) |
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| 144 | is_stop=False (bool) |
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| 145 | is_superlative=False (bool) |
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| 146 | is_wh=False (bool) |
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| 147 | lemma_=diagnose (str) |
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| 148 | lexspan=(15, 24) (object) |
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| 149 | norm=diagnosed (str) |
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| 150 | norm_len=9 (int) |
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| 151 | pos_=VERB (str) |
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| 152 | pref_name_=-<N>- |
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| 153 | sent_i=0 (int) |
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| 154 | shape=13110060611322374290 (int) |
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| 155 | shape_=xxxx (str) |
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| 156 | sub_names=[] |
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| 157 | tag=3822385049556375858 (int) |
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| 158 | tag_=VBN (str) |
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| 159 | tui_descs_= |
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| 160 | tuis=frozenset() |
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| 161 | tuis_= |
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| 162 | with: |
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| 163 | children=[6] (list) |
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| 164 | context_similarity=-1 |
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| 165 | cui=-1 |
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| 166 | cui_=-<N>- |
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| 167 | definition_=-<N>- |
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| 168 | dep=443 (int) |
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| 169 | dep_=prep (str) |
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| 170 | detected_name_=-<N>- |
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| 171 | ent=0 (int) |
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| 172 | ent_=-<N>- (str) |
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| 173 | ent_iob=0 (int) |
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| 174 | ent_iob_=O (str) |
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| 175 | i=4 (int) |
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| 176 | i_sent=4 (int) |
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| 177 | idx=25 (int) |
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| 178 | is_concept=False |
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| 179 | is_contraction=False (bool) |
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| 180 | is_ent=False (bool) |
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| 181 | is_pronoun=False (bool) |
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| 182 | is_punctuation=False (int) |
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| 183 | is_space=False (bool) |
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| 184 | is_stop=True (bool) |
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| 185 | is_superlative=False (bool) |
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| 186 | is_wh=False (bool) |
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| 187 | lemma_=with (str) |
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| 188 | lexspan=(25, 29) (object) |
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| 189 | norm=with (str) |
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| 190 | norm_len=4 (int) |
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| 191 | pos_=ADP (str) |
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| 192 | pref_name_=-<N>- |
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| 193 | sent_i=0 (int) |
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| 194 | shape=13110060611322374290 (int) |
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| 195 | shape_=xxxx (str) |
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| 196 | sub_names=[] |
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| 197 | tag=1292078113972184607 (int) |
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| 198 | tag_=IN (str) |
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| 199 | tui_descs_= |
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| 200 | tuis=frozenset() |
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| 201 | tuis_= |
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| 202 | liver: |
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| 203 | children=[] (list) |
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| 204 | context_similarity=-1 |
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| 205 | cui=-1 |
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| 206 | cui_=-<N>- |
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| 207 | definition_=-<N>- |
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| 208 | dep=7037928807040764755 (int) |
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| 209 | dep_=compound (str) |
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| 210 | detected_name_=-<N>- |
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| 211 | ent=0 (int) |
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| 212 | ent_=-<N>- (str) |
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| 213 | ent_iob=0 (int) |
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| 214 | ent_iob_=O (str) |
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| 215 | i=5 (int) |
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| 216 | i_sent=5 (int) |
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| 217 | idx=30 (int) |
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| 218 | is_concept=False |
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| 219 | is_contraction=False (bool) |
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| 220 | is_ent=False (bool) |
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| 221 | is_pronoun=False (bool) |
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| 222 | is_punctuation=False (int) |
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| 223 | is_space=False (bool) |
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| 224 | is_stop=False (bool) |
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| 225 | is_superlative=False (bool) |
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| 226 | is_wh=False (bool) |
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| 227 | lemma_=liver (str) |
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| 228 | lexspan=(30, 35) (object) |
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| 229 | norm=liver (str) |
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| 230 | norm_len=5 (int) |
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| 231 | pos_=NOUN (str) |
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| 232 | pref_name_=-<N>- |
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| 233 | sent_i=0 (int) |
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| 234 | shape=13110060611322374290 (int) |
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| 235 | shape_=xxxx (str) |
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| 236 | sub_names=[] |
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| 237 | tag=15308085513773655218 (int) |
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| 238 | tag_=NN (str) |
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| 239 | tui_descs_= |
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| 240 | tuis=frozenset() |
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| 241 | tuis_= |
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| 242 | disease: |
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| 243 | children=[5] (list) |
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| 244 | context_similarity=-1 |
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| 245 | cui=-1 |
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| 246 | cui_=-<N>- |
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| 247 | definition_=-<N>- |
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| 248 | dep=439 (int) |
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| 249 | dep_=pobj (str) |
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| 250 | detected_name_=-<N>- |
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| 251 | ent=0 (int) |
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| 252 | ent_=-<N>- (str) |
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| 253 | ent_iob=0 (int) |
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| 254 | ent_iob_=O (str) |
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| 255 | i=6 (int) |
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| 256 | i_sent=6 (int) |
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| 257 | idx=36 (int) |
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| 258 | is_concept=False |
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| 259 | is_contraction=False (bool) |
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| 260 | is_ent=False (bool) |
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| 261 | is_pronoun=False (bool) |
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| 262 | is_punctuation=False (int) |
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| 263 | is_space=False (bool) |
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| 264 | is_stop=False (bool) |
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| 265 | is_superlative=False (bool) |
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| 266 | is_wh=False (bool) |
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| 267 | lemma_=disease (str) |
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| 268 | lexspan=(36, 43) (object) |
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| 269 | norm=disease (str) |
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| 270 | norm_len=7 (int) |
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| 271 | pos_=NOUN (str) |
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| 272 | pref_name_=-<N>- |
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| 273 | sent_i=0 (int) |
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| 274 | shape=13110060611322374290 (int) |
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| 275 | shape_=xxxx (str) |
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| 276 | sub_names=[] |
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| 277 | tag=15308085513773655218 (int) |
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| 278 | tag_=NN (str) |
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| 279 | tui_descs_= |
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| 280 | tuis=frozenset() |
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| 281 | tuis_= |
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| 282 | while: |
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| 283 | children=[8] (list) |
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| 284 | context_similarity=-1 |
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| 285 | cui=-1 |
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| 286 | cui_=-<N>- |
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| 287 | definition_=-<N>- |
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| 288 | dep=443 (int) |
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| 289 | dep_=prep (str) |
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| 290 | detected_name_=-<N>- |
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| 291 | ent=0 (int) |
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| 292 | ent_=-<N>- (str) |
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| 293 | ent_iob=0 (int) |
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| 294 | ent_iob_=O (str) |
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| 295 | i=7 (int) |
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| 296 | i_sent=7 (int) |
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| 297 | idx=44 (int) |
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| 298 | is_concept=False |
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| 299 | is_contraction=False (bool) |
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| 300 | is_ent=False (bool) |
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| 301 | is_pronoun=False (bool) |
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| 302 | is_punctuation=False (int) |
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| 303 | is_space=False (bool) |
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| 304 | is_stop=True (bool) |
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| 305 | is_superlative=False (bool) |
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| 306 | is_wh=False (bool) |
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| 307 | lemma_=while (str) |
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| 308 | lexspan=(44, 49) (object) |
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| 309 | norm=while (str) |
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| 310 | norm_len=5 (int) |
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| 311 | pos_=SCONJ (str) |
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| 312 | pref_name_=-<N>- |
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| 313 | sent_i=0 (int) |
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| 314 | shape=13110060611322374290 (int) |
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| 315 | shape_=xxxx (str) |
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| 316 | sub_names=[] |
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| 317 | tag=1292078113972184607 (int) |
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| 318 | tag_=IN (str) |
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| 319 | tui_descs_= |
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| 320 | tuis=frozenset() |
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| 321 | tuis_= |
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| 322 | in: |
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| 323 | children=[9] (list) |
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| 324 | context_similarity=-1 |
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| 325 | cui=-1 |
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| 326 | cui_=-<N>- |
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| 327 | definition_=-<N>- |
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| 328 | dep=443 (int) |
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| 329 | dep_=prep (str) |
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| 330 | detected_name_=-<N>- |
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| 331 | ent=0 (int) |
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| 332 | ent_=-<N>- (str) |
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| 333 | ent_iob=0 (int) |
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| 334 | ent_iob_=O (str) |
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| 335 | i=8 (int) |
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| 336 | i_sent=8 (int) |
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| 337 | idx=50 (int) |
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| 338 | is_concept=False |
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| 339 | is_contraction=False (bool) |
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| 340 | is_ent=False (bool) |
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| 341 | is_pronoun=False (bool) |
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| 342 | is_punctuation=False (int) |
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| 343 | is_space=False (bool) |
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| 344 | is_stop=True (bool) |
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| 345 | is_superlative=False (bool) |
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| 346 | is_wh=False (bool) |
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| 347 | lemma_=in (str) |
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| 348 | lexspan=(50, 52) (object) |
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| 349 | norm=in (str) |
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| 350 | norm_len=2 (int) |
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| 351 | pos_=ADP (str) |
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| 352 | pref_name_=-<N>- |
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| 353 | sent_i=0 (int) |
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| 354 | shape=4370460163704169311 (int) |
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| 355 | shape_=xx (str) |
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| 356 | sub_names=[] |
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| 357 | tag=1292078113972184607 (int) |
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| 358 | tag_=IN (str) |
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| 359 | tui_descs_= |
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| 360 | tuis=frozenset() |
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| 361 | tuis_= |
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| 362 | Chicago: |
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| 363 | children=[] (list) |
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| 364 | context_similarity=1 |
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| 365 | cui=8044 |
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| 366 | cui_=C0008044 |
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| 367 | definition_=-<N>- |
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| 368 | dep=439 (int) |
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| 369 | dep_=pobj (str) |
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| 370 | detected_name_=chicago |
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| 371 | ent=384 (int) |
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| 372 | ent_=GPE (str) |
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| 373 | ent_iob=3 (int) |
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| 374 | ent_iob_=B (str) |
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| 375 | i=9 (int) |
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| 376 | i_sent=9 (int) |
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| 377 | idx=53 (int) |
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| 378 | is_concept=True |
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| 379 | is_contraction=False (bool) |
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| 380 | is_ent=True (bool) |
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| 381 | is_pronoun=False (bool) |
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| 382 | is_punctuation=False (int) |
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| 383 | is_space=False (bool) |
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| 384 | is_stop=False (bool) |
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| 385 | is_superlative=False (bool) |
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| 386 | is_wh=False (bool) |
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| 387 | lemma_=Chicago (str) |
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| 388 | lexspan=(53, 60) (object) |
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| 389 | norm=Chicago (str) |
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| 390 | norm_len=7 (int) |
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| 391 | pos_=PROPN (str) |
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| 392 | pref_name_=chicago |
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| 393 | sent_i=0 (int) |
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| 394 | shape=16072095006890171862 (int) |
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| 395 | shape_=Xxxxx (str) |
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| 396 | sub_names=('chicago',) |
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| 397 | tag=15794550382381185553 (int) |
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| 398 | tag_=NNP (str) |
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| 399 | tui_descs_=Geographic Area |
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| 400 | tuis=('T083',) |
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| 401 | tuis_=T083 |
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| 402 | .: |
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| 403 | children=[] (list) |
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| 404 | context_similarity=-1 |
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| 405 | cui=-1 |
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| 406 | cui_=-<N>- |
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| 407 | definition_=-<N>- |
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| 408 | dep=445 (int) |
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| 409 | dep_=punct (str) |
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| 410 | detected_name_=-<N>- |
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| 411 | ent=0 (int) |
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| 412 | ent_=-<N>- (str) |
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| 413 | ent_iob=0 (int) |
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| 414 | ent_iob_=O (str) |
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| 415 | i=10 (int) |
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| 416 | i_sent=10 (int) |
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| 417 | idx=60 (int) |
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| 418 | is_concept=False |
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| 419 | is_contraction=False (bool) |
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| 420 | is_ent=False (bool) |
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| 421 | is_pronoun=False (bool) |
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| 422 | is_punctuation=True (int) |
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| 423 | is_space=False (bool) |
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| 424 | is_stop=False (bool) |
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| 425 | is_superlative=False (bool) |
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| 426 | is_wh=False (bool) |
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| 427 | lemma_=. (str) |
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| 428 | lexspan=(60, 61) (object) |
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| 429 | norm=. (str) |
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| 430 | norm_len=1 (int) |
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| 431 | pos_=PUNCT (str) |
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| 432 | pref_name_=-<N>- |
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| 433 | sent_i=0 (int) |
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| 434 | shape=12646065887601541794 (int) |
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| 435 | shape_=. (str) |
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| 436 | sub_names=[] |
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| 437 | tag=12646065887601541794 (int) |
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| 438 | tag_=. (str) |
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| 439 | tui_descs_= |
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| 440 | tuis=frozenset() |
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| 441 | tuis_= |
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| 442 | entities: |
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| 443 | John Smith |
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| 444 | Smith |
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| 445 | Chicago |