--- a +++ b/example/cui2vec/cui2vec.conf @@ -0,0 +1,46 @@ +## application context configuration imported by example app +## see https://plandes.github.io/util/doc/config.html#application-context +[default] +# root directory given by the application, which is this directory +root_dir = ${appenv:root_dir}/.. +# the directory to hold the cached UMLS data +cache_dir = ${root_dir}/cache + +# tell the CLI API to load the logging config +[cli] +apps = list: log_cli, app + +# configure the logging system +[log_cli] +class_name = zensols.cli.LogConfigurator +format = ${program:name}: %%(message)s +log_name = ${program:name} +level = debug + +[import] +# refer to sections for which we need substitution in this file +references = list: uts, default +sections = list: imp_uts_key, imp_conf + +# import the UTS resource library +[imp_conf] +type = import +config_files = list: + resource(zensols.mednlp): resources/uts.conf, + resource(zensols.mednlp): resources/cui2vec.yml + +# import UTS key for access +[imp_uts_key] +type = json +default_section = uts +config_file = ${default:root_dir}/uts-key.json + +# UTS (UMLS access) +[uts] +cache_file = ${default:cache_dir}/uts-request.dat + +# indicate what class to use as the application (methods are action) +[app] +class_name = ${program:name}.Application +uts_client = instance: uts_client +cui2vec_embedding = instance: cui2vec_500_embedding