[e988c2]: / tests / docs / test_run_generate_dataset_example.py

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import textwrap
import unittest
import pytest
from . import test_complete_examples
def test_run_ehrql_dataset_example(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import create_dataset
from ehrql.tables.tpp import patients
dataset = create_dataset()
dataset.define_population(patients.exists_for_patient())
"""
),
)
test_complete_examples.test_ehrql_example(tmp_path, example)
def test_run_ehrql_measures_example(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import create_measures, months
from ehrql.tables.tpp import patients
measures = create_measures()
measures.define_measure(
name="test",
numerator=patients.exists_for_patient(),
denominator=patients.exists_for_patient(),
intervals=months(12).starting_on("2020-01-01"),
)
"""
),
)
test_complete_examples.test_ehrql_example(tmp_path, example)
def test_run_ehrql_dataset_example_failing(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import create_dataset
dataset = create_dataset()
dataset.define_population(not_a_function())
"""
),
)
with pytest.raises(test_complete_examples.EhrqlExampleTestError) as exc_info:
test_complete_examples.test_ehrql_example(tmp_path, example)
assert type(exc_info.value) is test_complete_examples.EhrqlExampleTestError
def test_run_ehrql_measures_example_failing(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import create_measures, months
from ehrql.tables.tpp import patients
measures = create_measures()
measures.define_measure(
name="test",
numerator=patients.exists_for_patient(),
denominator=not_a_function(),
intervals=months(12).starting_on("2020-01-01"),
)
"""
),
)
with pytest.raises(test_complete_examples.EhrqlExampleTestError) as exc_info:
test_complete_examples.test_ehrql_example(tmp_path, example)
assert type(exc_info.value) is test_complete_examples.EhrqlExampleTestError
def test_run_ehrql_dataset_example_failing_codelist_from_csv_call(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import codelist_from_csv, create_dataset
from ehrql.tables.tpp import patients
codes = codelist_from_csv()
dataset = create_dataset()
dataset.define_population(patients.exists_for_patient())
"""
),
)
with pytest.raises(
test_complete_examples.EhrqlExampleTestError,
match=r"generate_dataset failed for example",
) as exc_info:
test_complete_examples.test_ehrql_example(tmp_path, example)
assert type(exc_info.value) is test_complete_examples.EhrqlExampleTestError
def test_run_ehrql_measures_example_failing_codelist_from_csv_call(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import create_measures, months
from ehrql.tables.tpp import patients
codes = codelist_from_csv()
measures = create_measures()
measures.define_measure(
name="test",
numerator=patients.exists_for_patient(),
denominator=patients.exists_for_patient(),
intervals=months(12).starting_on("2020-01-01"),
)
"""
),
)
with pytest.raises(
test_complete_examples.EhrqlExampleTestError,
match=r"generate_measures failed for example",
) as exc_info:
test_complete_examples.test_ehrql_example(tmp_path, example)
assert type(exc_info.value) is test_complete_examples.EhrqlExampleTestError
def test_run_ehrql_dataset_example_gives_unreadable_csv(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import create_dataset
from ehrql.tables.tpp import patients
dataset = create_dataset()
dataset.define_population(patients.exists_for_patient())
"""
),
)
with unittest.mock.patch("ehrql.main.generate_dataset", return_value=None):
with pytest.raises(
test_complete_examples.EhrqlExampleTestError,
match=r"Check of CSV output failed for example",
) as exc_info:
test_complete_examples.test_ehrql_example(tmp_path, example)
assert type(exc_info.value) is test_complete_examples.EhrqlExampleTestError
def test_run_ehrql_measures_example_gives_unreadable_csv(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import create_measures, months
from ehrql.tables.tpp import patients
measures = create_measures()
measures.define_measure(
name="test",
numerator=patients.exists_for_patient(),
denominator=patients.exists_for_patient(),
intervals=months(12).starting_on("2020-01-01"),
)
"""
),
)
with unittest.mock.patch("ehrql.main.generate_measures", return_value=None):
with pytest.raises(
test_complete_examples.EhrqlExampleTestError,
match=r"Check of CSV output failed for example",
) as exc_info:
test_complete_examples.test_ehrql_example(tmp_path, example)
assert type(exc_info.value) is test_complete_examples.EhrqlExampleTestError
def test_run_ehrql_non_matching_example(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import create_measures
"""
),
)
with pytest.raises(
test_complete_examples.EhrqlExampleTestError,
) as exc_info:
test_complete_examples.test_ehrql_example(tmp_path, example)
assert type(exc_info.value) is test_complete_examples.EhrqlExampleTestError
def test_run_ehrql_cannot_include_measures_and_dataset(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
from ehrql import create_measures, create_dataset
dataset = create_dataset()
measures = create_measures()
"""
),
)
with pytest.raises(
test_complete_examples.EhrqlExampleTestError,
) as exc_info:
test_complete_examples.test_ehrql_example(tmp_path, example)
assert type(exc_info.value) is test_complete_examples.EhrqlExampleTestError
def test_run_ehrql_partial_dataset_example(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
dataset.define_population(patients.exists_for_patient())
"""
),
)
test_complete_examples.test_ehrql_example(tmp_path, example)
def test_run_ehrql_partial_dataset_example_no_population_defined(tmp_path):
example = test_complete_examples.EhrqlExample(
path="test",
fence_number=1,
source=textwrap.dedent(
"""\
dataset.year = patients.date_of_birth.year
"""
),
)
test_complete_examples.test_ehrql_example(tmp_path, example)